Analysis of interatomic Contacts of Structural Units in PDB entry:
9NEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NEV entry

There are 2 chains in PDB entry 9NEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 682ASN 895
B
 THR 682ASN 895
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9NEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
692 701Right-handed alpha
Helix 2
AA2
A
702 707Right-handed alpha
Helix 3
AA3
A
711 715Right-handed 310
Helix 4
AA4
A
731 746Right-handed alpha
Helix 5
AA5
A
774 777Right-handed 310
Helix 6
AA6
A
778 789Right-handed alpha
Helix 7
AA7
A
789 798Right-handed alpha
Helix 8
AA8
B
692 701Right-handed alpha
Helix 9
AA9
B
702 707Right-handed alpha
Helix 10
AB1
B
711 715Right-handed 310
Helix 11
AB2
B
731 746Right-handed alpha
Helix 12
AB3
B
774 777Right-handed 310
Helix 13
AB4
B
778 789Right-handed alpha
Helix 14
AB5
B
789 798Right-handed alpha
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There are 6 sheets in PDB entry 9NEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
718 721first strand
Strand 2
A
724 728anti-parallel
Strand 3
A
865 870anti-parallel
Strand 4
A
831 836anti-parallel
Strand 5
A
887 894anti-parallel
Strand 6
A
806 814anti-parallel
Strand 7
A
770 772anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
844 846first strand
Strand 2
A
882 885anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
856 858first strand
Strand 2
A
849 851anti-parallel
Strand 3
A
877 879anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
718 721first strand
Strand 2
B
724 728anti-parallel
Strand 3
B
865 870anti-parallel
Strand 4
B
831 836anti-parallel
Strand 5
B
887 894anti-parallel
Strand 6
B
806 814anti-parallel
Strand 7
B
770 772anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
844 846first strand
Strand 2
B
882 885anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
856 858first strand
Strand 2
B
849 851anti-parallel
Strand 3
B
877 879anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il