Analysis of interatomic Contacts of Structural Units in PDB entry:
9NEY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NEY entry

There are 3 chains in PDB entry 9NEY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ILE 870
C
 GLN 1THR 129
B
 VAL 2ILE 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9NEY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 100Right-handed alpha
Helix 2
AA2
A
103 113Right-handed alpha
Helix 3
AA3
A
130 132Right-handed 310
Helix 4
AA4
A
174 178Right-handed 310
Helix 5
AA5
A
216 231Right-handed alpha
Helix 6
AA6
A
259 267Right-handed alpha
Helix 7
AA7
A
270 274Right-handed 310
Helix 8
AA8
A
275 297Right-handed alpha
Helix 9
AA9
A
309 319Right-handed alpha
Helix 10
AB1
A
334 347Right-handed alpha
Helix 11
AB2
A
350 352Right-handed 310
Helix 12
AB3
A
353 358Right-handed alpha
Helix 13
AB4
A
401 405Right-handed 310
Helix 14
AB5
A
409 413Right-handed 310
Helix 15
AB6
A
460 462Right-handed 310
Helix 16
AB7
A
467 471Right-handed 310
Helix 17
AB8
A
495 506Right-handed alpha
Helix 18
AB9
A
549 557Right-handed alpha
Helix 19
AC1
A
573 578Right-handed alpha
Helix 20
AC2
A
587 595Right-handed alpha
Helix 21
AC3
A
599 601Right-handed 310
Helix 22
AC4
A
602 620Right-handed alpha
Helix 23
AC5
A
637 642Right-handed alpha
Helix 24
AC6
A
643 646Right-handed 310
Helix 25
AC7
A
651 659Right-handed alpha
Helix 26
AC8
A
660 664Right-handed 310
Helix 27
AC9
A
692 721Right-handed alpha
Helix 28
AD1
A
721 752Right-handed alpha
Helix 29
AD2
A
765 800Right-handed alpha
Helix 30
AD3
A
800 825Right-handed alpha
Helix 31
AD4
A
835 847Right-handed alpha
Helix 32
AD5
A
852 857Right-handed alpha
Helix 33
AD6
A
859 870Right-handed alpha
Helix 34
AD7
C
28 32Right-handed 310
Helix 35
AD8
C
87 91Right-handed 310
Helix 36
AD9
C
106 110Right-handed 310
Helix 37
AE1
B
79 83Right-handed 310
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There are 10 sheets in PDB entry 9NEY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
42 45anti-parallel
Strand 6
A
151 154parallel
Strand 7
A
184 187parallel
Strand 8
A
165 166anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
302 303parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 195first strand
Strand 2
A
372 375anti-parallel
Strand 3
A
414 415anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 458first strand
Strand 2
A
426 431anti-parallel
Strand 3
A
543 545parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 570first strand
Strand 2
A
581 583parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
120 124parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
120 124parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
113 116anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
62 67anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
46 49anti-parallel
Strand 3
B
33 38anti-parallel
Strand 4
B
84 90anti-parallel
Strand 5
B
104 105anti-parallel
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