Analysis of interatomic Contacts of Structural Units in PDB entry:
9NEZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NEZ entry

There are 8 chains in PDB entry 9NEZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	SER 257
B	MET 1	CYS 343
C	ASN 11	LEU 291
D	LEU 6	HIS 424
E	LYS 3	SER 257
F	MET 1	CYS 343
G	ASN 11	LEU 291
H	LEU 6	HIS 424

There are119 helices in PDB entry 9NEZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	24	Right-handed alpha
Helix 2	AA2	A	26	33	Right-handed alpha
Helix 3	AA3	A	64	76	Right-handed alpha
Helix 4	AA4	A	84	90	Right-handed alpha
Helix 5	AA5	A	91	95	Right-handed 310
Helix 6	AA6	A	99	108	Right-handed alpha
Helix 7	AA7	A	122	126	Right-handed 310
Helix 8	AA8	A	139	153	Right-handed alpha
Helix 9	AA9	A	162	171	Right-handed alpha
Helix 10	AB1	A	174	179	Right-handed alpha
Helix 11	AB2	A	184	188	Right-handed 310
Helix 12	AB3	A	194	199	Right-handed alpha
Helix 13	AB4	A	216	227	Right-handed alpha
Helix 14	AB5	A	230	238	Right-handed alpha
Helix 15	AB6	A	246	256	Right-handed alpha
Helix 16	AB7	B	10	19	Right-handed alpha
Helix 17	AB8	B	42	46	Right-handed 310
Helix 18	AB9	B	56	60	Right-handed 310
Helix 19	AC1	B	94	109	Right-handed alpha
Helix 20	AC2	B	114	122	Right-handed alpha
Helix 21	AC3	B	170	178	Right-handed alpha
Helix 22	AC4	B	179	182	Right-handed 310
Helix 23	AC5	B	186	203	Right-handed alpha
Helix 24	AC6	B	212	220	Right-handed alpha
Helix 25	AC7	B	223	233	Right-handed alpha
Helix 26	AC8	B	237	242	Right-handed alpha
Helix 27	AC9	B	273	277	Right-handed 310
Helix 28	AD1	B	279	283	Right-handed 310
Helix 29	AD2	B	288	301	Right-handed alpha
Helix 30	AD3	B	316	321	Right-handed alpha
Helix 31	AD4	B	327	337	Right-handed alpha
Helix 32	AD5	C	41	48	Right-handed alpha
Helix 33	AD6	C	88	96	Right-handed alpha
Helix 34	AD7	C	131	145	Right-handed alpha
Helix 35	AD8	C	146	149	Right-handed 310
Helix 36	AD9	C	166	173	Right-handed alpha
Helix 37	AE1	C	173	180	Right-handed alpha
Helix 38	AE2	C	200	206	Right-handed alpha
Helix 39	AE3	C	211	213	Right-handed 310
Helix 40	AE4	C	225	236	Right-handed alpha
Helix 41	AE5	C	239	241	Right-handed 310
Helix 42	AE6	C	272	276	Right-handed alpha
Helix 43	AE7	C	280	287	Right-handed alpha
Helix 44	AE8	D	53	61	Right-handed alpha
Helix 45	AE9	D	62	65	Right-handed 310
Helix 46	AF1	D	68	84	Right-handed alpha
Helix 47	AF2	D	89	115	Right-handed alpha
Helix 48	AF3	D	116	121	Right-handed alpha
Helix 49	AF4	D	127	131	Right-handed 310
Helix 50	AF5	D	133	155	Right-handed alpha
Helix 51	AF6	D	174	201	Right-handed alpha
Helix 52	AF7	D	240	242	Right-handed 310
Helix 53	AF8	D	243	247	Right-handed alpha
Helix 54	AF9	D	271	280	Right-handed alpha
Helix 55	AG1	D	281	283	Right-handed 310
Helix 56	AG2	D	285	294	Right-handed alpha
Helix 57	AG3	D	304	329	Right-handed alpha
Helix 58	AG4	D	376	395	Right-handed alpha
Helix 59	AG5	D	400	415	Right-handed alpha
Helix 60	AG6	D	418	423	Right-handed alpha
Helix 61	AG7	E	15	24	Right-handed alpha
Helix 62	AG8	E	26	33	Right-handed alpha
Helix 63	AG9	E	64	77	Right-handed alpha
Helix 64	AH1	E	84	90	Right-handed alpha
Helix 65	AH2	E	91	95	Right-handed 310
Helix 66	AH3	E	99	108	Right-handed alpha
Helix 67	AH4	E	122	126	Right-handed 310
Helix 68	AH5	E	139	153	Right-handed alpha
Helix 69	AH6	E	162	171	Right-handed alpha
Helix 70	AH7	E	174	179	Right-handed alpha
Helix 71	AH8	E	184	188	Right-handed 310
Helix 72	AH9	E	194	200	Right-handed alpha
Helix 73	AI1	E	216	227	Right-handed alpha
Helix 74	AI2	E	230	238	Right-handed alpha
Helix 75	AI3	E	246	256	Right-handed alpha
Helix 76	AI4	F	10	19	Right-handed alpha
Helix 77	AI5	F	42	46	Right-handed 310
Helix 78	AI6	F	56	60	Right-handed 310
Helix 79	AI7	F	94	109	Right-handed alpha
Helix 80	AI8	F	114	123	Right-handed alpha
Helix 81	AI9	F	168	178	Right-handed alpha
Helix 82	AJ1	F	179	182	Right-handed 310
Helix 83	AJ2	F	186	203	Right-handed alpha
Helix 84	AJ3	F	212	220	Right-handed alpha
Helix 85	AJ4	F	223	233	Right-handed alpha
Helix 86	AJ5	F	237	242	Right-handed alpha
Helix 87	AJ6	F	273	277	Right-handed 310
Helix 88	AJ7	F	279	283	Right-handed 310
Helix 89	AJ8	F	288	301	Right-handed alpha
Helix 90	AJ9	F	316	321	Right-handed alpha
Helix 91	AK1	F	327	337	Right-handed alpha
Helix 92	AK2	G	41	48	Right-handed alpha
Helix 93	AK3	G	88	96	Right-handed alpha
Helix 94	AK4	G	131	145	Right-handed alpha
Helix 95	AK5	G	146	149	Right-handed 310
Helix 96	AK6	G	166	179	Right-handed alpha
Helix 97	AK7	G	200	205	Right-handed 310
Helix 98	AK8	G	211	213	Right-handed 310
Helix 99	AK9	G	225	236	Right-handed alpha
Helix 100	AL1	G	239	241	Right-handed 310
Helix 101	AL2	G	272	276	Right-handed alpha
Helix 102	AL3	G	280	287	Right-handed alpha
Helix 103	AL4	H	53	59	Right-handed alpha
Helix 104	AL5	H	60	64	Right-handed 310
Helix 105	AL6	H	68	85	Right-handed alpha
Helix 106	AL7	H	89	115	Right-handed alpha
Helix 107	AL8	H	117	122	Right-handed 310
Helix 108	AL9	H	125	129	Right-handed 310
Helix 109	AM1	H	133	156	Right-handed alpha
Helix 110	AM2	H	174	201	Right-handed alpha
Helix 111	AM3	H	240	242	Right-handed 310
Helix 112	AM4	H	243	247	Right-handed alpha
Helix 113	AM5	H	271	280	Right-handed alpha
Helix 114	AM6	H	281	283	Right-handed 310
Helix 115	AM7	H	285	294	Right-handed alpha
Helix 116	AM8	H	304	331	Right-handed alpha
Helix 117	AM9	H	376	395	Right-handed alpha
Helix 118	AN1	H	400	416	Right-handed alpha
Helix 119	AN2	H	418	424	Right-handed alpha

There are 24 sheets in PDB entry 9NEZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	39	first strand
Strand 2	A	4	10	parallel
Strand 3	A	52	58	parallel
Strand 4	A	77	83	parallel
Strand 5	A	131	133	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	117	121	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	24	29	anti-parallel
Strand 3	B	88	93	parallel
Strand 4	B	124	129	parallel
Strand 5	B	153	158	parallel
Strand 6	B	161	165	anti-parallel
Strand 7	B	3	7	anti-parallel
Strand 8	B	183	184	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	65	72	anti-parallel
Strand 3	B	261	267	anti-parallel
Strand 4	B	250	255	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	69	first strand
Strand 2	C	55	60	anti-parallel
Strand 3	C	102	109	anti-parallel
Strand 4	C	18	26	anti-parallel
Strand 5	C	32	39	anti-parallel
Strand 6	C	80	85	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	198	first strand
Strand 2	C	182	188	parallel
Strand 3	C	152	158	parallel
Strand 4	C	122	128	parallel
Strand 5	C	215	220	parallel
Strand 6	C	243	245	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	264	first strand
Strand 2	C	269	271	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	9	first strand
Strand 2	D	22	27	anti-parallel
Strand 3	D	30	36	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	165	first strand
Strand 2	D	168	169	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	219	first strand
Strand 2	D	228	233	anti-parallel
Strand 3	D	238	239	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	252	first strand
Strand 2	D	259	263	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	349	first strand
Strand 2	D	359	365	anti-parallel
Strand 3	D	368	375	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	39	first strand
Strand 2	E	4	10	parallel
Strand 3	E	54	58	parallel
Strand 4	E	79	83	parallel
Strand 5	E	131	133	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	63	first strand
Strand 2	E	117	121	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	39	first strand
Strand 2	F	24	29	anti-parallel
Strand 3	F	88	93	parallel
Strand 4	F	124	129	parallel
Strand 5	F	153	158	parallel
Strand 6	F	161	166	anti-parallel
Strand 7	F	3	7	anti-parallel
Strand 8	F	183	184	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	80	first strand
Strand 2	F	65	72	anti-parallel
Strand 3	F	262	267	anti-parallel
Strand 4	F	250	255	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	69	first strand
Strand 2	G	55	60	anti-parallel
Strand 3	G	102	105	anti-parallel
Strand 4	G	18	26	anti-parallel
Strand 5	G	32	39	anti-parallel
Strand 6	G	80	85	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	185	188	first strand
Strand 2	G	152	158	parallel
Strand 3	G	122	128	parallel
Strand 4	G	215	220	parallel
Strand 5	G	243	245	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	262	264	first strand
Strand 2	G	269	271	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	9	first strand
Strand 2	H	21	26	anti-parallel
Strand 3	H	31	37	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	165	first strand
Strand 2	H	168	169	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	238	239	first strand
Strand 2	H	228	233	anti-parallel
Strand 3	H	214	219	anti-parallel
Strand 4	H	269	270	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	248	252	first strand
Strand 2	H	259	263	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	345	352	first strand
Strand 2	H	357	365	anti-parallel
Strand 3	H	368	375	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NEZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NEZ