Analysis of interatomic Contacts of Structural Units in PDB entry:
9NF0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NF0 entry

There are 8 chains in PDB entry 9NF0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	SER 257
B	MET 1	GLU 339
C	MET 1	ASP 292
D	LEU 6	HIS 424
E	LYS 3	SER 257
F	MET 1	GLU 339
G	MET 1	ASP 292
H	TYR 5	HIS 424

There are121 helices in PDB entry 9NF0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	23	Right-handed alpha
Helix 2	AA2	A	24	28	Right-handed 310
Helix 3	AA3	A	29	33	Right-handed alpha
Helix 4	AA4	A	63	76	Right-handed alpha
Helix 5	AA5	A	84	90	Right-handed alpha
Helix 6	AA6	A	91	95	Right-handed 310
Helix 7	AA7	A	99	109	Right-handed alpha
Helix 8	AA8	A	122	126	Right-handed 310
Helix 9	AA9	A	139	153	Right-handed alpha
Helix 10	AB1	A	163	170	Right-handed alpha
Helix 11	AB2	A	174	179	Right-handed alpha
Helix 12	AB3	A	184	188	Right-handed 310
Helix 13	AB4	A	194	199	Right-handed alpha
Helix 14	AB5	A	216	227	Right-handed alpha
Helix 15	AB6	A	230	238	Right-handed alpha
Helix 16	AB7	A	246	257	Right-handed alpha
Helix 17	AB8	B	10	19	Right-handed alpha
Helix 18	AB9	B	20	22	Right-handed 310
Helix 19	AC1	B	42	46	Right-handed 310
Helix 20	AC2	B	56	61	Right-handed 310
Helix 21	AC3	B	94	109	Right-handed alpha
Helix 22	AC4	B	114	122	Right-handed alpha
Helix 23	AC5	B	168	178	Right-handed alpha
Helix 24	AC6	B	179	182	Right-handed 310
Helix 25	AC7	B	186	203	Right-handed alpha
Helix 26	AC8	B	212	220	Right-handed alpha
Helix 27	AC9	B	223	231	Right-handed alpha
Helix 28	AD1	B	237	242	Right-handed alpha
Helix 29	AD2	B	273	277	Right-handed 310
Helix 30	AD3	B	288	301	Right-handed alpha
Helix 31	AD4	B	316	321	Right-handed alpha
Helix 32	AD5	B	327	337	Right-handed alpha
Helix 33	AD6	C	3	8	Right-handed alpha
Helix 34	AD7	C	41	48	Right-handed alpha
Helix 35	AD8	C	88	95	Right-handed alpha
Helix 36	AD9	C	131	145	Right-handed alpha
Helix 37	AE1	C	160	164	Right-handed 310
Helix 38	AE2	C	166	173	Right-handed alpha
Helix 39	AE3	C	200	204	Right-handed 310
Helix 40	AE4	C	211	213	Right-handed 310
Helix 41	AE5	C	225	236	Right-handed alpha
Helix 42	AE6	C	239	241	Right-handed 310
Helix 43	AE7	C	272	276	Right-handed alpha
Helix 44	AE8	C	281	287	Right-handed alpha
Helix 45	AE9	D	44	49	Right-handed alpha
Helix 46	AF1	D	53	59	Right-handed alpha
Helix 47	AF2	D	60	65	Right-handed 310
Helix 48	AF3	D	68	85	Right-handed alpha
Helix 49	AF4	D	89	115	Right-handed alpha
Helix 50	AF5	D	116	121	Right-handed alpha
Helix 51	AF6	D	125	129	Right-handed 310
Helix 52	AF7	D	134	155	Right-handed alpha
Helix 53	AF8	D	174	201	Right-handed alpha
Helix 54	AF9	D	205	209	Right-handed 310
Helix 55	AG1	D	243	247	Right-handed alpha
Helix 56	AG2	D	271	280	Right-handed alpha
Helix 57	AG3	D	281	283	Right-handed 310
Helix 58	AG4	D	285	294	Right-handed alpha
Helix 59	AG5	D	304	330	Right-handed alpha
Helix 60	AG6	D	376	396	Right-handed alpha
Helix 61	AG7	D	400	414	Right-handed alpha
Helix 62	AG8	D	418	424	Right-handed alpha
Helix 63	AG9	E	15	23	Right-handed alpha
Helix 64	AH1	E	26	33	Right-handed alpha
Helix 65	AH2	E	63	76	Right-handed alpha
Helix 66	AH3	E	84	90	Right-handed alpha
Helix 67	AH4	E	91	95	Right-handed 310
Helix 68	AH5	E	99	109	Right-handed alpha
Helix 69	AH6	E	122	126	Right-handed 310
Helix 70	AH7	E	139	153	Right-handed alpha
Helix 71	AH8	E	162	170	Right-handed alpha
Helix 72	AH9	E	174	179	Right-handed alpha
Helix 73	AI1	E	184	188	Right-handed 310
Helix 74	AI2	E	194	199	Right-handed alpha
Helix 75	AI3	E	216	227	Right-handed alpha
Helix 76	AI4	E	230	239	Right-handed alpha
Helix 77	AI5	E	246	256	Right-handed alpha
Helix 78	AI6	F	10	19	Right-handed alpha
Helix 79	AI7	F	42	46	Right-handed 310
Helix 80	AI8	F	56	61	Right-handed 310
Helix 81	AI9	F	94	109	Right-handed alpha
Helix 82	AJ1	F	114	123	Right-handed alpha
Helix 83	AJ2	F	168	178	Right-handed alpha
Helix 84	AJ3	F	179	182	Right-handed 310
Helix 85	AJ4	F	186	203	Right-handed alpha
Helix 86	AJ5	F	212	220	Right-handed alpha
Helix 87	AJ6	F	223	233	Right-handed alpha
Helix 88	AJ7	F	237	242	Right-handed alpha
Helix 89	AJ8	F	273	277	Right-handed 310
Helix 90	AJ9	F	288	301	Right-handed alpha
Helix 91	AK1	F	316	321	Right-handed alpha
Helix 92	AK2	F	327	337	Right-handed alpha
Helix 93	AK3	G	41	48	Right-handed alpha
Helix 94	AK4	G	88	95	Right-handed alpha
Helix 95	AK5	G	131	145	Right-handed alpha
Helix 96	AK6	G	160	164	Right-handed 310
Helix 97	AK7	G	166	178	Right-handed alpha
Helix 98	AK8	G	200	205	Right-handed alpha
Helix 99	AK9	G	211	213	Right-handed 310
Helix 100	AL1	G	225	237	Right-handed alpha
Helix 101	AL2	G	239	241	Right-handed 310
Helix 102	AL3	G	272	276	Right-handed alpha
Helix 103	AL4	G	281	287	Right-handed alpha
Helix 104	AL5	H	44	49	Right-handed alpha
Helix 105	AL6	H	53	59	Right-handed alpha
Helix 106	AL7	H	60	65	Right-handed 310
Helix 107	AL8	H	68	85	Right-handed alpha
Helix 108	AL9	H	89	115	Right-handed alpha
Helix 109	AM1	H	125	129	Right-handed 310
Helix 110	AM2	H	133	155	Right-handed alpha
Helix 111	AM3	H	174	201	Right-handed alpha
Helix 112	AM4	H	205	209	Right-handed 310
Helix 113	AM5	H	243	247	Right-handed alpha
Helix 114	AM6	H	271	280	Right-handed alpha
Helix 115	AM7	H	281	283	Right-handed 310
Helix 116	AM8	H	285	294	Right-handed alpha
Helix 117	AM9	H	302	304	Right-handed 310
Helix 118	AN1	H	305	330	Right-handed alpha
Helix 119	AN2	H	376	396	Right-handed alpha
Helix 120	AN3	H	400	415	Right-handed alpha
Helix 121	AN4	H	418	424	Right-handed alpha

There are 22 sheets in PDB entry 9NF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	4	10	parallel
Strand 3	A	52	58	parallel
Strand 4	A	77	83	parallel
Strand 5	A	131	133	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	153	158	anti-parallel
Strand 4	B	124	129	parallel
Strand 5	B	88	93	parallel
Strand 6	B	23	29	parallel
Strand 7	B	35	39	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	65	72	anti-parallel
Strand 3	B	261	268	anti-parallel
Strand 4	B	249	255	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	69	first strand
Strand 2	C	55	60	anti-parallel
Strand 3	C	102	109	anti-parallel
Strand 4	C	18	27	anti-parallel
Strand 5	C	32	39	anti-parallel
Strand 6	C	79	85	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	198	first strand
Strand 2	C	182	188	parallel
Strand 3	C	152	158	parallel
Strand 4	C	122	128	parallel
Strand 5	C	215	220	parallel
Strand 6	C	243	246	parallel
Strand 7	C	278	280	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	264	first strand
Strand 2	C	269	271	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	21	26	anti-parallel
Strand 3	D	31	37	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	165	first strand
Strand 2	D	168	169	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	219	first strand
Strand 2	D	228	233	anti-parallel
Strand 3	D	238	240	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	252	first strand
Strand 2	D	259	263	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	353	first strand
Strand 2	D	356	365	anti-parallel
Strand 3	D	368	375	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	36	first strand
Strand 2	E	4	10	parallel
Strand 3	E	52	58	parallel
Strand 4	E	77	83	parallel
Strand 5	E	131	133	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	F	161	166	anti-parallel
Strand 3	F	153	158	anti-parallel
Strand 4	F	124	129	parallel
Strand 5	F	88	93	parallel
Strand 6	F	23	29	parallel
Strand 7	F	35	39	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	80	first strand
Strand 2	F	65	72	anti-parallel
Strand 3	F	261	268	anti-parallel
Strand 4	F	249	255	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	69	first strand
Strand 2	G	55	60	anti-parallel
Strand 3	G	102	109	anti-parallel
Strand 4	G	18	27	anti-parallel
Strand 5	G	33	39	anti-parallel
Strand 6	G	79	84	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	197	198	first strand
Strand 2	G	182	188	parallel
Strand 3	G	152	158	parallel
Strand 4	G	122	128	parallel
Strand 5	G	215	220	parallel
Strand 6	G	243	246	parallel
Strand 7	G	278	280	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	262	264	first strand
Strand 2	G	269	271	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	10	first strand
Strand 2	H	21	26	anti-parallel
Strand 3	H	31	37	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	165	first strand
Strand 2	H	168	169	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	215	219	first strand
Strand 2	H	228	233	anti-parallel
Strand 3	H	238	240	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	248	252	first strand
Strand 2	H	259	263	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	345	353	first strand
Strand 2	H	356	365	anti-parallel
Strand 3	H	368	375	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NF0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NF0