Analysis of interatomic Contacts of Structural Units in PDB entry:
9NF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NF4 entry

There are 6 chains in PDB entry 9NF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1SER 147
B
 PRO 1GLU 148
C
 PRO 1SER 146
D
 PRO 1SER 146
E
 PRO 1SER 147
F
 PRO 1SER 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 9NF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 32Right-handed alpha
Helix 2
AA2
A
35 38Right-handed 310
Helix 3
AA3
A
47 49Right-handed 310
Helix 4
AA4
A
74 93Right-handed alpha
Helix 5
AA5
A
96 98Right-handed 310
Helix 6
AA6
A
108 111Right-handed 310
Helix 7
AA7
A
124 130Right-handed alpha
Helix 8
AA8
A
135 145Right-handed alpha
Helix 9
AA9
B
13 32Right-handed alpha
Helix 10
AB1
B
35 38Right-handed 310
Helix 11
AB2
B
47 49Right-handed 310
Helix 12
AB3
B
74 93Right-handed alpha
Helix 13
AB4
B
96 98Right-handed 310
Helix 14
AB5
B
108 110Right-handed 310
Helix 15
AB6
B
124 130Right-handed alpha
Helix 16
AB7
B
134 145Right-handed alpha
Helix 17
AB8
C
13 32Right-handed alpha
Helix 18
AB9
C
35 38Right-handed 310
Helix 19
AC1
C
74 94Right-handed alpha
Helix 20
AC2
C
96 98Right-handed 310
Helix 21
AC3
C
108 110Right-handed 310
Helix 22
AC4
C
124 132Right-handed alpha
Helix 23
AC5
C
133 142Right-handed alpha
Helix 24
AC6
D
13 32Right-handed alpha
Helix 25
AC7
D
35 38Right-handed 310
Helix 26
AC8
D
47 49Right-handed 310
Helix 27
AC9
D
74 94Right-handed alpha
Helix 28
AD1
D
96 98Right-handed 310
Helix 29
AD2
D
108 111Right-handed 310
Helix 30
AD3
D
124 131Right-handed alpha
Helix 31
AD4
D
133 145Right-handed alpha
Helix 32
AD5
E
13 32Right-handed alpha
Helix 33
AD6
E
35 38Right-handed 310
Helix 34
AD7
E
74 94Right-handed alpha
Helix 35
AD8
E
96 98Right-handed 310
Helix 36
AD9
E
108 110Right-handed 310
Helix 37
AE1
E
124 131Right-handed alpha
Helix 38
AE2
E
135 145Right-handed alpha
Helix 39
AE3
F
13 31Right-handed alpha
Helix 40
AE4
F
35 38Right-handed 310
Helix 41
AE5
F
47 49Right-handed 310
Helix 42
AE6
F
74 93Right-handed alpha
Helix 43
AE7
F
96 98Right-handed 310
Helix 44
AE8
F
108 110Right-handed 310
Helix 45
AE9
F
124 130Right-handed alpha
Helix 46
AF1
F
135 145Right-handed alpha
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There are 8 sheets in PDB entry 9NF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
51 53anti-parallel
Strand 3
A
40 46anti-parallel
Strand 4
A
2 8parallel
Strand 5
A
63 70anti-parallel
Strand 6
A
100 107parallel
Strand 7
C
112 114anti-parallel
Strand 8
C
117 118anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
51 53anti-parallel
Strand 3
C
40 46anti-parallel
Strand 4
C
2 8parallel
Strand 5
C
63 70anti-parallel
Strand 6
C
100 107parallel
Strand 7
B
112 113anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
117 118anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 107first strand
Strand 2
B
63 70parallel
Strand 3
B
2 8anti-parallel
Strand 4
B
40 46parallel
Strand 5
C
51 53anti-parallel
Strand 6
C
56 57anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 57first strand
Strand 2
E
51 53anti-parallel
Strand 3
D
40 46anti-parallel
Strand 4
D
2 8parallel
Strand 5
D
63 70anti-parallel
Strand 6
D
100 107parallel
Strand 7
F
112 114anti-parallel
Strand 8
F
117 118anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 57first strand
Strand 2
D
51 53anti-parallel
Strand 3
F
40 46anti-parallel
Strand 4
F
2 8parallel
Strand 5
F
63 70anti-parallel
Strand 6
F
100 107parallel
Strand 7
E
112 114anti-parallel
Strand 8
E
117 118anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
113 114first strand
Strand 2
D
117 118anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
100 107first strand
Strand 2
E
63 70parallel
Strand 3
E
2 8anti-parallel
Strand 4
E
40 46parallel
Strand 5
F
51 53anti-parallel
Strand 6
F
56 57anti-parallel
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