Analysis of interatomic Contacts of Structural Units in PDB entry:
9NF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NF7 entry

There are 2 chains in PDB entry 9NF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 41THR 763
B
 ALA 41THR 763
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 9NF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 49Right-handed alpha
Helix 2
AA2
A
60 62Right-handed 310
Helix 3
AA3
A
63 89Right-handed alpha
Helix 4
AA4
A
92 107Right-handed alpha
Helix 5
AA5
A
108 110Right-handed 310
Helix 6
AA6
A
121 139Right-handed alpha
Helix 7
AA7
A
140 143Right-handed 310
Helix 8
AA8
A
144 166Right-handed alpha
Helix 9
AA9
A
168 173Right-handed 310
Helix 10
AB1
A
176 201Right-handed alpha
Helix 11
AB2
A
202 206Right-handed 310
Helix 12
AB3
A
211 222Right-handed alpha
Helix 13
AB4
A
223 225Right-handed 310
Helix 14
AB5
A
228 254Right-handed alpha
Helix 15
AB6
A
257 267Right-handed alpha
Helix 16
AB7
A
267 285Right-handed alpha
Helix 17
AB8
A
316 324Right-handed alpha
Helix 18
AB9
A
326 349Right-handed alpha
Helix 19
AC1
A
354 370Right-handed alpha
Helix 20
AC2
A
371 373Right-handed 310
Helix 21
AC3
A
380 390Right-handed alpha
Helix 22
AC4
A
396 412Right-handed alpha
Helix 23
AC5
A
414 419Right-handed 310
Helix 24
AC6
A
420 433Right-handed alpha
Helix 25
AC7
A
434 436Right-handed 310
Helix 26
AC8
A
438 449Right-handed alpha
Helix 27
AC9
A
449 466Right-handed alpha
Helix 28
AD1
A
467 488Right-handed alpha
Helix 29
AD2
A
554 563Right-handed alpha
Helix 30
AD3
A
617 636Right-handed alpha
Helix 31
AD4
A
648 658Right-handed alpha
Helix 32
AD5
A
676 680Right-handed 310
Helix 33
AD6
A
747 763Right-handed alpha
Helix 34
AD7
B
43 49Right-handed alpha
Helix 35
AD8
B
60 62Right-handed 310
Helix 36
AD9
B
63 89Right-handed alpha
Helix 37
AE1
B
92 107Right-handed alpha
Helix 38
AE2
B
108 110Right-handed 310
Helix 39
AE3
B
121 139Right-handed alpha
Helix 40
AE4
B
140 143Right-handed 310
Helix 41
AE5
B
144 166Right-handed alpha
Helix 42
AE6
B
168 173Right-handed 310
Helix 43
AE7
B
176 201Right-handed alpha
Helix 44
AE8
B
202 206Right-handed 310
Helix 45
AE9
B
211 222Right-handed alpha
Helix 46
AF1
B
223 225Right-handed 310
Helix 47
AF2
B
228 254Right-handed alpha
Helix 48
AF3
B
257 267Right-handed alpha
Helix 49
AF4
B
267 285Right-handed alpha
Helix 50
AF5
B
316 324Right-handed alpha
Helix 51
AF6
B
326 349Right-handed alpha
Helix 52
AF7
B
354 370Right-handed alpha
Helix 53
AF8
B
371 373Right-handed 310
Helix 54
AF9
B
380 390Right-handed alpha
Helix 55
AG1
B
396 412Right-handed alpha
Helix 56
AG2
B
414 419Right-handed 310
Helix 57
AG3
B
420 433Right-handed alpha
Helix 58
AG4
B
434 436Right-handed 310
Helix 59
AG5
B
438 449Right-handed alpha
Helix 60
AG6
B
449 466Right-handed alpha
Helix 61
AG7
B
467 488Right-handed alpha
Helix 62
AG8
B
554 563Right-handed alpha
Helix 63
AG9
B
617 636Right-handed alpha
Helix 64
AH1
B
648 658Right-handed alpha
Helix 65
AH2
B
676 680Right-handed 310
Helix 66
AH3
B
747 763Right-handed alpha
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There are 4 sheets in PDB entry 9NF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
378 379anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 514first strand
Strand 2
A
493 499anti-parallel
Strand 3
A
535 539anti-parallel
Strand 4
A
605 609parallel
Strand 5
A
640 644parallel
Strand 6
A
744 745parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
378 379anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
510 514first strand
Strand 2
B
493 499anti-parallel
Strand 3
B
535 539anti-parallel
Strand 4
B
605 609parallel
Strand 5
B
640 644parallel
Strand 6
B
744 745parallel
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