Analysis of interatomic Contacts of Structural Units in PDB entry:
9NF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NF8 entry

There are 3 chains in PDB entry 9NF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5ASP 536
B
 GLU 8PHE 336
C
 G 1 U 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9NF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 39Right-handed alpha
Helix 2
AA2
A
49 68Right-handed alpha
Helix 3
AA3
A
69 74Right-handed alpha
Helix 4
AA4
A
77 83Right-handed alpha
Helix 5
AA5
A
89 100Right-handed alpha
Helix 6
AA6
A
104 114Right-handed alpha
Helix 7
AA7
A
114 119Right-handed alpha
Helix 8
AA8
A
121 139Right-handed alpha
Helix 9
AA9
A
147 158Right-handed alpha
Helix 10
AB1
A
160 170Right-handed alpha
Helix 11
AB2
A
180 187Right-handed alpha
Helix 12
AB3
A
192 204Right-handed alpha
Helix 13
AB4
A
205 213Right-handed alpha
Helix 14
AB5
A
222 236Right-handed alpha
Helix 15
AB6
A
240 252Right-handed alpha
Helix 16
AB7
A
254 258Right-handed 310
Helix 17
AB8
A
261 264Right-handed 310
Helix 18
AB9
A
265 275Right-handed alpha
Helix 19
AC1
A
277 284Right-handed alpha
Helix 20
AC2
A
284 291Right-handed alpha
Helix 21
AC3
A
298 309Right-handed alpha
Helix 22
AC4
A
311 318Right-handed alpha
Helix 23
AC5
A
320 334Right-handed alpha
Helix 24
AC6
A
346 360Right-handed alpha
Helix 25
AC7
A
378 383Right-handed 310
Helix 26
AC8
A
391 407Right-handed alpha
Helix 27
AC9
A
429 437Right-handed alpha
Helix 28
AD1
A
448 457Right-handed alpha
Helix 29
AD2
A
478 487Right-handed alpha
Helix 30
AD3
A
525 535Right-handed alpha
Helix 31
AD4
B
9 25Right-handed alpha
Helix 32
AD5
B
34 41Right-handed alpha
Helix 33
AD6
B
49 54Right-handed alpha
Helix 34
AD7
B
55 60Right-handed alpha
Helix 35
AD8
B
64 73Right-handed alpha
Helix 36
AD9
B
123 129Right-handed alpha
Helix 37
AE1
B
162 170Right-handed alpha
Helix 38
AE2
B
185 228Right-handed alpha
Helix 39
AE3
B
245 253Right-handed alpha
Helix 40
AE4
B
278 288Right-handed alpha
Helix 41
AE5
B
308 336Right-handed alpha
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There are 6 sheets in PDB entry 9NF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
506 507anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
177 178anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
412 415anti-parallel
Strand 3
A
371 376parallel
Strand 4
A
463 468parallel
Strand 5
A
495 500parallel
Strand 6
A
516 520parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
88 91anti-parallel
Strand 3
B
80 82anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
153 157anti-parallel
Strand 3
B
112 116anti-parallel
Strand 4
B
181 184anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 263first strand
Strand 2
B
271 275anti-parallel
Strand 3
B
233 238anti-parallel
Strand 4
B
301 303anti-parallel
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