Analysis of interatomic Contacts of Structural Units in PDB entry:
9NFE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NFE entry

There are 3 chains in PDB entry 9NFE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 24	TYR 795
B	SER 24	TYR 795
C	SER 24	TYR 795

There are 81 helices in PDB entry 9NFE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	53	Right-handed alpha
Helix 2	AA2	A	65	73	Right-handed alpha
Helix 3	AA3	A	83	92	Right-handed 310
Helix 4	AA4	A	164	169	Right-handed alpha
Helix 5	AA5	A	170	172	Right-handed 310
Helix 6	AA6	A	175	179	Right-handed 310
Helix 7	AA7	A	184	188	Right-handed 310
Helix 8	AA8	A	193	198	Right-handed 310
Helix 9	AA9	A	252	256	Right-handed 310
Helix 10	AB1	A	372	374	Right-handed 310
Helix 11	AB2	A	375	391	Right-handed alpha
Helix 12	AB3	A	405	416	Right-handed alpha
Helix 13	AB4	A	433	452	Right-handed alpha
Helix 14	AB5	A	465	472	Right-handed alpha
Helix 15	AB6	A	475	479	Right-handed 310
Helix 16	AB7	A	481	484	Right-handed 310
Helix 17	AB8	A	485	490	Right-handed alpha
Helix 18	AB9	A	490	500	Right-handed alpha
Helix 19	AC1	A	513	520	Right-handed alpha
Helix 20	AC2	A	522	526	Right-handed 310
Helix 21	AC3	A	540	545	Right-handed alpha
Helix 22	AC4	A	561	569	Right-handed alpha
Helix 23	AC5	A	570	574	Right-handed 310
Helix 24	AC6	A	586	595	Right-handed alpha
Helix 25	AC7	A	606	618	Right-handed alpha
Helix 26	AC8	A	623	649	Right-handed alpha
Helix 27	AC9	A	680	689	Right-handed alpha
Helix 28	AD1	A	781	793	Right-handed alpha
Helix 29	AD2	B	46	53	Right-handed alpha
Helix 30	AD3	B	65	73	Right-handed alpha
Helix 31	AD4	B	83	92	Right-handed 310
Helix 32	AD5	B	164	169	Right-handed alpha
Helix 33	AD6	B	170	172	Right-handed 310
Helix 34	AD7	B	175	179	Right-handed 310
Helix 35	AD8	B	184	188	Right-handed 310
Helix 36	AD9	B	193	198	Right-handed 310
Helix 37	AE1	B	252	256	Right-handed 310
Helix 38	AE2	B	372	374	Right-handed 310
Helix 39	AE3	B	375	391	Right-handed alpha
Helix 40	AE4	B	405	416	Right-handed alpha
Helix 41	AE5	B	433	452	Right-handed alpha
Helix 42	AE6	B	465	472	Right-handed alpha
Helix 43	AE7	B	475	479	Right-handed 310
Helix 44	AE8	B	481	484	Right-handed 310
Helix 45	AE9	B	485	491	Right-handed alpha
Helix 46	AF1	B	491	500	Right-handed alpha
Helix 47	AF2	B	513	520	Right-handed alpha
Helix 48	AF3	B	522	526	Right-handed 310
Helix 49	AF4	B	540	545	Right-handed alpha
Helix 50	AF5	B	561	569	Right-handed alpha
Helix 51	AF6	B	570	574	Right-handed 310
Helix 52	AF7	B	586	595	Right-handed alpha
Helix 53	AF8	B	606	618	Right-handed alpha
Helix 54	AF9	B	623	649	Right-handed alpha
Helix 55	AG1	B	680	688	Right-handed alpha
Helix 56	AG2	B	781	793	Right-handed alpha
Helix 57	AG3	C	46	52	Right-handed alpha
Helix 58	AG4	C	65	73	Right-handed alpha
Helix 59	AG5	C	83	92	Right-handed 310
Helix 60	AG6	C	164	169	Right-handed alpha
Helix 61	AG7	C	170	172	Right-handed 310
Helix 62	AG8	C	193	198	Right-handed 310
Helix 63	AG9	C	252	256	Right-handed 310
Helix 64	AH1	C	372	378	Right-handed 310
Helix 65	AH2	C	379	391	Right-handed alpha
Helix 66	AH3	C	405	416	Right-handed alpha
Helix 67	AH4	C	433	452	Right-handed alpha
Helix 68	AH5	C	465	472	Right-handed alpha
Helix 69	AH6	C	475	479	Right-handed 310
Helix 70	AH7	C	481	484	Right-handed 310
Helix 71	AH8	C	485	490	Right-handed alpha
Helix 72	AH9	C	490	500	Right-handed alpha
Helix 73	AI1	C	513	520	Right-handed alpha
Helix 74	AI2	C	522	526	Right-handed 310
Helix 75	AI3	C	540	545	Right-handed alpha
Helix 76	AI4	C	561	569	Right-handed alpha
Helix 77	AI5	C	586	595	Right-handed alpha
Helix 78	AI6	C	606	618	Right-handed alpha
Helix 79	AI7	C	623	649	Right-handed alpha
Helix 80	AI8	C	680	688	Right-handed alpha
Helix 81	AI9	C	781	793	Right-handed alpha

There are 30 sheets in PDB entry 9NFE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	214	219	anti-parallel
Strand 3	A	112	117	anti-parallel
Strand 4	A	143	146	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	62	first strand
Strand 2	A	30	38	anti-parallel
Strand 3	A	94	103	anti-parallel
Strand 4	A	155	162	anti-parallel
Strand 5	A	124	128	anti-parallel
Strand 6	A	131	136	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	209	210	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	235	first strand
Strand 2	A	240	250	anti-parallel
Strand 3	A	283	291	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	278	first strand
Strand 2	A	259	267	anti-parallel
Strand 3	A	307	315	anti-parallel
Strand 4	A	321	329	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	339	first strand
Strand 2	A	349	354	anti-parallel
Strand 3	A	357	359	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	506	first strand
Strand 2	A	457	461	parallel
Strand 3	A	418	422	parallel
Strand 4	A	394	397	parallel
Strand 5	A	361	366	parallel
Strand 6	A	655	658	parallel
Strand 7	A	550	551	parallel
Strand 8	A	528	529	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	578	first strand
Strand 2	A	581	585	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	699	first strand
Strand 2	A	704	710	anti-parallel
Strand 3	A	743	749	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	738	first strand
Strand 2	A	716	724	anti-parallel
Strand 3	A	756	764	anti-parallel
Strand 4	A	767	775	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	214	219	anti-parallel
Strand 3	B	112	117	anti-parallel
Strand 4	B	143	146	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	62	first strand
Strand 2	B	30	38	anti-parallel
Strand 3	B	94	103	anti-parallel
Strand 4	B	155	162	anti-parallel
Strand 5	B	124	128	anti-parallel
Strand 6	B	131	136	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	209	210	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	235	first strand
Strand 2	B	240	250	anti-parallel
Strand 3	B	283	291	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	278	first strand
Strand 2	B	259	267	anti-parallel
Strand 3	B	307	315	anti-parallel
Strand 4	B	321	329	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	339	first strand
Strand 2	B	349	354	anti-parallel
Strand 3	B	357	359	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	506	first strand
Strand 2	B	457	461	parallel
Strand 3	B	418	422	parallel
Strand 4	B	394	397	parallel
Strand 5	B	361	366	parallel
Strand 6	B	655	658	parallel
Strand 7	B	550	551	parallel
Strand 8	B	528	529	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	578	first strand
Strand 2	B	581	585	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	699	first strand
Strand 2	B	704	710	anti-parallel
Strand 3	B	743	749	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	730	738	first strand
Strand 2	B	716	724	anti-parallel
Strand 3	B	756	764	anti-parallel
Strand 4	B	767	775	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	27	first strand
Strand 2	C	214	219	anti-parallel
Strand 3	C	112	117	anti-parallel
Strand 4	C	143	146	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	62	first strand
Strand 2	C	30	38	anti-parallel
Strand 3	C	94	103	anti-parallel
Strand 4	C	155	162	anti-parallel
Strand 5	C	124	128	anti-parallel
Strand 6	C	131	136	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	209	210	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	235	first strand
Strand 2	C	240	250	anti-parallel
Strand 3	C	283	291	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	278	first strand
Strand 2	C	259	267	anti-parallel
Strand 3	C	307	315	anti-parallel
Strand 4	C	321	329	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	339	first strand
Strand 2	C	349	354	anti-parallel
Strand 3	C	357	359	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	457	461	parallel
Strand 3	C	418	422	parallel
Strand 4	C	394	397	parallel
Strand 5	C	361	366	parallel
Strand 6	C	655	658	parallel
Strand 7	C	550	551	parallel
Strand 8	C	528	529	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	577	578	first strand
Strand 2	C	581	585	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	693	699	first strand
Strand 2	C	704	710	anti-parallel
Strand 3	C	743	749	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	738	first strand
Strand 2	C	716	724	anti-parallel
Strand 3	C	756	764	anti-parallel
Strand 4	C	767	775	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NFE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NFE