Analysis of interatomic Contacts of Structural Units in PDB entry:
9NFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NFI entry

There is 1 chain in PDB entry 9NFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 43ASN 1289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 9NFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 52Right-handed 310
Helix 2
AA2
A
56 96Right-handed alpha
Helix 3
AA3
A
119 170Right-handed alpha
Helix 4
AA4
A
171 177Right-handed alpha
Helix 5
AA5
A
179 222Right-handed alpha
Helix 6
AA6
A
224 232Right-handed alpha
Helix 7
AA7
A
256 272Right-handed alpha
Helix 8
AA8
A
272 279Right-handed alpha
Helix 9
AA9
A
281 336Right-handed alpha
Helix 10
AB1
A
341 382Right-handed alpha
Helix 11
AB2
A
445 453Right-handed alpha
Helix 12
AB3
A
474 481Right-handed alpha
Helix 13
AB4
A
495 502Right-handed alpha
Helix 14
AB5
A
508 520Right-handed alpha
Helix 15
AB6
A
544 559Right-handed alpha
Helix 16
AB7
A
576 589Right-handed alpha
Helix 17
AB8
A
625 630Right-handed 310
Helix 18
AB9
A
716 723Right-handed alpha
Helix 19
AC1
A
725 756Right-handed alpha
Helix 20
AC2
A
762 816Right-handed alpha
Helix 21
AC3
A
818 823Right-handed alpha
Helix 22
AC4
A
824 826Right-handed 310
Helix 23
AC5
A
827 871Right-handed alpha
Helix 24
AC6
A
871 880Right-handed alpha
Helix 25
AC7
A
883 891Right-handed alpha
Helix 26
AC8
A
903 920Right-handed alpha
Helix 27
AC9
A
920 927Right-handed alpha
Helix 28
AD1
A
929 984Right-handed alpha
Helix 29
AD2
A
989 1002Right-handed alpha
Helix 30
AD3
A
1014 1029Right-handed alpha
Helix 31
AD4
A
1094 1101Right-handed alpha
Helix 32
AD5
A
1122 1129Right-handed alpha
Helix 33
AD6
A
1143 1150Right-handed alpha
Helix 34
AD7
A
1158 1168Right-handed alpha
Helix 35
AD8
A
1171 1176Right-handed alpha
Helix 36
AD9
A
1180 1184Right-handed 310
Helix 37
AE1
A
1194 1208Right-handed alpha
Helix 38
AE2
A
1224 1239Right-handed alpha
Helix 39
AE3
A
1250 1256Right-handed alpha
Helix 40
AE4
A
1273 1280Right-handed alpha
Helix 41
AE5
A
1282 1288Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9NFI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 429first strand
Strand 2
A
404 411anti-parallel
Strand 3
A
460 465anti-parallel
Strand 4
A
468 469anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 486first strand
Strand 2
A
563 567parallel
Strand 3
A
593 597parallel
Strand 4
A
435 438parallel
Strand 5
A
609 614parallel
Strand 6
A
617 623anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1076 1077first strand
Strand 2
A
1052 1054anti-parallel
Strand 3
A
1111 1113anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1130 1133first strand
Strand 2
A
1213 1216parallel
Strand 3
A
1243 1246parallel
Strand 4
A
1082 1084parallel
Strand 5
A
1259 1260parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1263 1264first strand
Strand 2
A
1267 1268anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il