Analysis of interatomic Contacts of Structural Units in PDB entry:
9NFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NFJ entry

There is 1 chain in PDB entry 9NFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 43ASN 1289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9NFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 52Right-handed alpha
Helix 2
AA2
A
56 96Right-handed alpha
Helix 3
AA3
A
119 170Right-handed alpha
Helix 4
AA4
A
171 178Right-handed alpha
Helix 5
AA5
A
179 223Right-handed alpha
Helix 6
AA6
A
223 239Right-handed alpha
Helix 7
AA7
A
254 272Right-handed alpha
Helix 8
AA8
A
272 279Right-handed alpha
Helix 9
AA9
A
281 336Right-handed alpha
Helix 10
AB1
A
339 382Right-handed alpha
Helix 11
AB2
A
444 453Right-handed alpha
Helix 12
AB3
A
474 481Right-handed alpha
Helix 13
AB4
A
496 502Right-handed alpha
Helix 14
AB5
A
508 519Right-handed alpha
Helix 15
AB6
A
544 559Right-handed alpha
Helix 16
AB7
A
574 590Right-handed alpha
Helix 17
AB8
A
600 604Right-handed 310
Helix 18
AB9
A
623 630Right-handed alpha
Helix 19
AC1
A
632 638Right-handed alpha
Helix 20
AC2
A
714 721Right-handed alpha
Helix 21
AC3
A
725 757Right-handed alpha
Helix 22
AC4
A
761 816Right-handed alpha
Helix 23
AC5
A
818 826Right-handed 310
Helix 24
AC6
A
827 870Right-handed alpha
Helix 25
AC7
A
873 882Right-handed alpha
Helix 26
AC8
A
882 891Right-handed alpha
Helix 27
AC9
A
904 920Right-handed alpha
Helix 28
AD1
A
920 927Right-handed alpha
Helix 29
AD2
A
929 984Right-handed alpha
Helix 30
AD3
A
987 1001Right-handed alpha
Helix 31
AD4
A
1015 1029Right-handed alpha
Helix 32
AD5
A
1092 1101Right-handed alpha
Helix 33
AD6
A
1122 1129Right-handed alpha
Helix 34
AD7
A
1143 1150Right-handed alpha
Helix 35
AD8
A
1158 1167Right-handed alpha
Helix 36
AD9
A
1168 1170Right-handed 310
Helix 37
AE1
A
1173 1177Right-handed 310
Helix 38
AE2
A
1194 1208Right-handed alpha
Helix 39
AE3
A
1227 1239Right-handed alpha
Helix 40
AE4
A
1273 1281Right-handed alpha
Helix 41
AE5
A
1282 1288Right-handed alpha
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There are 5 sheets in PDB entry 9NFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 429first strand
Strand 2
A
404 411anti-parallel
Strand 3
A
462 464anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 485first strand
Strand 2
A
563 567parallel
Strand 3
A
593 597parallel
Strand 4
A
435 439parallel
Strand 5
A
609 614parallel
Strand 6
A
617 618anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
535 536anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1064 1077first strand
Strand 2
A
1052 1061anti-parallel
Strand 3
A
1110 1113anti-parallel
Strand 4
A
1116 1117anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1131 1133first strand
Strand 2
A
1214 1217parallel
Strand 3
A
1244 1247parallel
Strand 4
A
1083 1087parallel
Strand 5
A
1259 1264parallel
Strand 6
A
1267 1272anti-parallel
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