Analysis of interatomic Contacts of Structural Units in PDB entry:
9NFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NFK entry

There is 1 chain in PDB entry 9NFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 43GLU 1032
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9NFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 52Right-handed alpha
Helix 2
AA2
A
56 96Right-handed alpha
Helix 3
AA3
A
119 170Right-handed alpha
Helix 4
AA4
A
171 178Right-handed alpha
Helix 5
AA5
A
179 200Right-handed alpha
Helix 6
AA6
A
200 222Right-handed alpha
Helix 7
AA7
A
223 272Right-handed alpha
Helix 8
AA8
A
272 280Right-handed alpha
Helix 9
AA9
A
281 336Right-handed alpha
Helix 10
AB1
A
339 360Right-handed alpha
Helix 11
AB2
A
360 383Right-handed alpha
Helix 12
AB3
A
444 453Right-handed alpha
Helix 13
AB4
A
474 481Right-handed alpha
Helix 14
AB5
A
495 502Right-handed alpha
Helix 15
AB6
A
508 519Right-handed alpha
Helix 16
AB7
A
520 525Right-handed 310
Helix 17
AB8
A
530 534Right-handed 310
Helix 18
AB9
A
537 541Right-handed 310
Helix 19
AC1
A
544 558Right-handed alpha
Helix 20
AC2
A
574 589Right-handed alpha
Helix 21
AC3
A
600 607Right-handed alpha
Helix 22
AC4
A
623 631Right-handed alpha
Helix 23
AC5
A
632 640Right-handed alpha
Helix 24
AC6
A
714 721Right-handed alpha
Helix 25
AC7
A
725 759Right-handed alpha
Helix 26
AC8
A
761 816Right-handed alpha
Helix 27
AC9
A
817 826Right-handed 310
Helix 28
AD1
A
827 871Right-handed alpha
Helix 29
AD2
A
871 888Right-handed alpha
Helix 30
AD3
A
889 895Right-handed alpha
Helix 31
AD4
A
899 920Right-handed alpha
Helix 32
AD5
A
920 928Right-handed alpha
Helix 33
AD6
A
929 984Right-handed alpha
Helix 34
AD7
A
987 1006Right-handed alpha
Helix 35
AD8
A
1015 1031Right-handed alpha
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There are 3 sheets in PDB entry 9NFK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 429first strand
Strand 2
A
404 410anti-parallel
Strand 3
A
460 465anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 438first strand
Strand 2
A
609 613parallel
Strand 3
A
618 622anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 485first strand
Strand 2
A
563 567parallel
Strand 3
A
593 597parallel
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