Analysis of interatomic Contacts of Structural Units in PDB entry:
9NFL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NFL entry

There is 1 chain in PDB entry 9NFL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 43GLU 1032
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 9NFL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 53Right-handed 310
Helix 2
AA2
A
56 96Right-handed alpha
Helix 3
AA3
A
119 168Right-handed alpha
Helix 4
AA4
A
171 178Right-handed alpha
Helix 5
AA5
A
179 223Right-handed alpha
Helix 6
AA6
A
225 240Right-handed alpha
Helix 7
AA7
A
242 273Right-handed alpha
Helix 8
AA8
A
280 336Right-handed alpha
Helix 9
AA9
A
339 383Right-handed alpha
Helix 10
AB1
A
445 453Right-handed alpha
Helix 11
AB2
A
469 473Right-handed 310
Helix 12
AB3
A
474 480Right-handed alpha
Helix 13
AB4
A
495 502Right-handed alpha
Helix 14
AB5
A
508 519Right-handed alpha
Helix 15
AB6
A
520 525Right-handed 310
Helix 16
AB7
A
530 534Right-handed 310
Helix 17
AB8
A
544 559Right-handed alpha
Helix 18
AB9
A
574 590Right-handed alpha
Helix 19
AC1
A
600 606Right-handed alpha
Helix 20
AC2
A
623 630Right-handed alpha
Helix 21
AC3
A
714 721Right-handed alpha
Helix 22
AC4
A
722 724Right-handed 310
Helix 23
AC5
A
725 757Right-handed alpha
Helix 24
AC6
A
762 816Right-handed alpha
Helix 25
AC7
A
817 823Right-handed 310
Helix 26
AC8
A
827 871Right-handed alpha
Helix 27
AC9
A
873 888Right-handed alpha
Helix 28
AD1
A
891 896Right-handed alpha
Helix 29
AD2
A
898 928Right-handed alpha
Helix 30
AD3
A
929 983Right-handed alpha
Helix 31
AD4
A
987 1004Right-handed alpha
Helix 32
AD5
A
1014 1030Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9NFL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
404 411anti-parallel
Strand 3
A
426 429anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
404 411anti-parallel
Strand 3
A
460 465anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 438first strand
Strand 2
A
609 613parallel
Strand 3
A
618 622anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
563 567parallel
Strand 3
A
593 597parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il