Analysis of interatomic Contacts of Structural Units in PDB entry:
9NFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NFM entry

There is 1 chain in PDB entry 9NFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 43ILE 1283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 9NFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 52Right-handed alpha
Helix 2
AA2
A
56 98Right-handed alpha
Helix 3
AA3
A
117 170Right-handed alpha
Helix 4
AA4
A
171 198Right-handed alpha
Helix 5
AA5
A
199 233Right-handed alpha
Helix 6
AA6
A
233 272Right-handed alpha
Helix 7
AA7
A
272 279Right-handed alpha
Helix 8
AA8
A
283 336Right-handed alpha
Helix 9
AA9
A
339 383Right-handed alpha
Helix 10
AB1
A
444 453Right-handed alpha
Helix 11
AB2
A
464 468Right-handed 310
Helix 12
AB3
A
469 473Right-handed 310
Helix 13
AB4
A
474 481Right-handed alpha
Helix 14
AB5
A
495 502Right-handed alpha
Helix 15
AB6
A
509 516Right-handed alpha
Helix 16
AB7
A
517 519Right-handed 310
Helix 17
AB8
A
521 526Right-handed alpha
Helix 18
AB9
A
544 557Right-handed alpha
Helix 19
AC1
A
574 590Right-handed alpha
Helix 20
AC2
A
600 606Right-handed alpha
Helix 21
AC3
A
623 630Right-handed alpha
Helix 22
AC4
A
714 723Right-handed alpha
Helix 23
AC5
A
725 756Right-handed alpha
Helix 24
AC6
A
757 759Right-handed 310
Helix 25
AC7
A
761 816Right-handed alpha
Helix 26
AC8
A
817 822Right-handed alpha
Helix 27
AC9
A
823 826Right-handed 310
Helix 28
AD1
A
827 842Right-handed alpha
Helix 29
AD2
A
843 846Right-handed 310
Helix 30
AD3
A
847 888Right-handed alpha
Helix 31
AD4
A
888 920Right-handed alpha
Helix 32
AD5
A
920 927Right-handed alpha
Helix 33
AD6
A
929 984Right-handed alpha
Helix 34
AD7
A
987 1008Right-handed alpha
Helix 35
AD8
A
1015 1030Right-handed alpha
Helix 36
AD9
A
1092 1101Right-handed alpha
Helix 37
AE1
A
1122 1129Right-handed alpha
Helix 38
AE2
A
1143 1151Right-handed alpha
Helix 39
AE3
A
1158 1169Right-handed alpha
Helix 40
AE4
A
1171 1176Right-handed alpha
Helix 41
AE5
A
1194 1208Right-handed alpha
Helix 42
AE6
A
1224 1239Right-handed alpha
Helix 43
AE7
A
1250 1255Right-handed alpha
Helix 44
AE8
A
1274 1281Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9NFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 410first strand
Strand 2
A
460 462anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
609 610parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 485first strand
Strand 2
A
563 567parallel
Strand 3
A
593 597parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1084 1085first strand
Strand 2
A
1259 1263parallel
Strand 3
A
1268 1273anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1131 1132first strand
Strand 2
A
1213 1215parallel
Strand 3
A
1243 1245parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il