Analysis of interatomic Contacts of Structural Units in PDB entry:
9NFU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NFU entry

There are 2 chains in PDB entry 9NFU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 3	ALA 1964
C	VAL -2	ILE 244

There are 62 helices in PDB entry 9NFU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	14	Right-handed alpha
Helix 2	AA2	A	21	37	Right-handed alpha
Helix 3	AA3	A	41	63	Right-handed alpha
Helix 4	AA4	A	68	90	Right-handed alpha
Helix 5	AA5	A	108	122	Right-handed alpha
Helix 6	AA6	A	137	155	Right-handed alpha
Helix 7	AA7	A	156	158	Right-handed 310
Helix 8	AA8	A	167	197	Right-handed alpha
Helix 9	AA9	A	201	215	Right-handed alpha
Helix 10	AB1	A	217	234	Right-handed alpha
Helix 11	AB2	A	243	248	Right-handed alpha
Helix 12	AB3	A	251	261	Right-handed alpha
Helix 13	AB4	A	264	280	Right-handed alpha
Helix 14	AB5	A	308	324	Right-handed alpha
Helix 15	AB6	A	334	338	Right-handed 310
Helix 16	AB7	A	339	353	Right-handed alpha
Helix 17	AB8	A	355	360	Right-handed alpha
Helix 18	AB9	A	393	419	Right-handed alpha
Helix 19	AC1	A	423	439	Right-handed alpha
Helix 20	AC2	A	443	450	Right-handed alpha
Helix 21	AC3	A	451	456	Right-handed 310
Helix 22	AC4	A	461	469	Right-handed 310
Helix 23	AC5	A	470	483	Right-handed alpha
Helix 24	AC6	A	494	499	Right-handed alpha
Helix 25	AC7	A	500	502	Right-handed 310
Helix 26	AC8	A	523	539	Right-handed alpha
Helix 27	AC9	A	550	555	Right-handed alpha
Helix 28	AD1	A	561	569	Right-handed alpha
Helix 29	AD2	A	587	601	Right-handed alpha
Helix 30	AD3	A	609	613	Right-handed 310
Helix 31	AD4	A	667	683	Right-handed alpha
Helix 32	AD5	A	710	727	Right-handed alpha
Helix 33	AD6	A	731	733	Right-handed 310
Helix 34	AD7	A	764	775	Right-handed alpha
Helix 35	AD8	A	793	809	Right-handed alpha
Helix 36	AD9	A	814	838	Right-handed alpha
Helix 37	AE1	A	851	877	Right-handed alpha
Helix 38	AE2	A	916	934	Right-handed alpha
Helix 39	AE3	A	961	970	Right-handed alpha
Helix 40	AE4	A	979	995	Right-handed alpha
Helix 41	AE5	A	1003	1016	Right-handed alpha
Helix 42	AE6	A	1041	1051	Right-handed alpha
Helix 43	AE7	A	1053	1065	Right-handed alpha
Helix 44	AE8	A	1073	1081	Right-handed alpha
Helix 45	AE9	A	1083	1092	Right-handed alpha
Helix 46	AF1	A	1119	1126	Right-handed alpha
Helix 47	AF2	A	1127	1132	Right-handed 310
Helix 48	AF3	A	1156	1159	Right-handed 310
Helix 49	AF4	A	1304	1310	Right-handed alpha
Helix 50	AF5	A	1347	1352	Right-handed alpha
Helix 51	AF6	A	1367	1372	Right-handed 310
Helix 52	AF7	A	1431	1438	Right-handed alpha
Helix 53	AF8	A	1438	1450	Right-handed alpha
Helix 54	AF9	A	1557	1572	Right-handed alpha
Helix 55	AG1	A	1580	1585	Right-handed alpha
Helix 56	AG2	A	1587	1592	Right-handed alpha
Helix 57	AG3	A	1649	1651	Right-handed 310
Helix 58	AG4	A	1678	1681	Right-handed 310
Helix 59	AG5	A	1682	1686	Right-handed 310
Helix 60	AG6	A	1772	1777	Right-handed alpha
Helix 61	AG7	A	1790	1794	Right-handed 310
Helix 62	AG8	A	1866	1870	Right-handed 310

There are 29 sheets in PDB entry 9NFU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	367	368	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	126	131	parallel
Strand 3	A	97	101	parallel
Strand 4	A	282	285	parallel
Strand 5	A	382	389	anti-parallel
Strand 6	A	374	377	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	508	509	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	632	first strand
Strand 2	A	617	622	anti-parallel
Strand 3	A	605	608	anti-parallel
Strand 4	A	578	583	parallel
Strand 5	A	645	651	parallel
Strand 6	A	690	696	parallel
Strand 7	A	739	740	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	632	first strand
Strand 2	A	617	622	anti-parallel
Strand 3	A	605	608	anti-parallel
Strand 4	A	578	583	parallel
Strand 5	A	645	651	parallel
Strand 6	A	690	696	parallel
Strand 7	A	735	737	parallel
Strand 8	A	778	781	anti-parallel
Strand 9	A	786	789	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	744	746	first strand
Strand 2	A	752	755	anti-parallel
Strand 3	A	761	762	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	889	first strand
Strand 2	A	897	902	anti-parallel
Strand 3	A	909	912	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1067	1068	first strand
Strand 2	A	1516	1520	anti-parallel
Strand 3	A	1523	1527	anti-parallel
Strand 4	A	1535	1545	anti-parallel
Strand 5	A	1548	1556	anti-parallel
Strand 6	A	1602	1605	parallel

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There are 13 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1530	1532	first strand
Strand 2	A	1535	1545	anti-parallel
Strand 3	A	1548	1556	anti-parallel
Strand 4	A	1611	1614	parallel
Strand 5	A	1618	1624	anti-parallel
Strand 6	A	1630	1638	anti-parallel
Strand 7	A	1642	1647	anti-parallel
Strand 8	A	1654	1658	anti-parallel
Strand 9	A	1690	1692	parallel
Strand 10	A	1716	1718	parallel
Strand 11	A	1763	1766	parallel
Strand 12	A	1748	1751	anti-parallel
Strand 13	A	1742	1743	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1151	1155	first strand
Strand 2	A	1160	1163	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1227	1228	first strand
Strand 2	A	1280	1281	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1312	1313	first strand
Strand 2	A	1332	1333	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1316	1318	first strand
Strand 2	A	1336	1338	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1322	1325	first strand
Strand 2	A	1343	1346	parallel
Strand 3	A	1400	1408	parallel
Strand 4	A	1411	1418	anti-parallel
Strand 5	A	1423	1425	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1322	1325	first strand
Strand 2	A	1343	1346	parallel
Strand 3	A	1400	1408	parallel
Strand 4	A	1411	1418	anti-parallel
Strand 5	A	1428	1430	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1353	1357	first strand
Strand 2	A	1360	1364	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1374	1376	first strand
Strand 2	A	1380	1383	anti-parallel
Strand 3	A	1386	1389	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1458	1464	first strand
Strand 2	A	1469	1475	anti-parallel
Strand 3	A	1481	1487	anti-parallel
Strand 4	A	1490	1495	anti-parallel
Strand 5	A	1505	1508	anti-parallel
Strand 6	A	1594	1595	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1672	1676	first strand
Strand 2	A	1700	1704	parallel
Strand 3	A	1728	1732	parallel
Strand 4	A	1779	1783	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1813	1817	first strand
Strand 2	A	1820	1824	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1833	1837	first strand
Strand 2	A	1840	1844	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1854	1858	first strand
Strand 2	A	1861	1865	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1876	1880	first strand
Strand 2	A	1883	1887	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1896	1897	first strand
Strand 2	A	1905	1906	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	-1	7	first strand
Strand 2	C	20	25	anti-parallel
Strand 3	C	78	82	anti-parallel
Strand 4	C	69	73	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	45	52	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	93	99	anti-parallel
Strand 5	C	108	111	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	147	first strand
Strand 2	C	161	165	anti-parallel
Strand 3	C	207	210	anti-parallel
Strand 4	C	201	204	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	221	228	anti-parallel
Strand 4	C	234	236	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	221	228	anti-parallel
Strand 4	C	240	242	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NFU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NFU