Analysis of interatomic Contacts of Structural Units in PDB entry:
9NGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NGM entry

There are 2 chains in PDB entry 9NGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 57SER 659
B
 ALA 57SER 659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9NGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 75Right-handed alpha
Helix 2
AA2
A
80 82Right-handed 310
Helix 3
AA3
A
83 89Right-handed alpha
Helix 4
AA4
A
89 94Right-handed alpha
Helix 5
AA5
A
95 116Right-handed alpha
Helix 6
AA6
A
118 131Right-handed alpha
Helix 7
AA7
A
132 167Right-handed alpha
Helix 8
AA8
A
170 177Right-handed alpha
Helix 9
AA9
A
184 189Right-handed alpha
Helix 10
AB1
A
190 207Right-handed alpha
Helix 11
AB2
A
208 218Right-handed alpha
Helix 12
AB3
A
227 248Right-handed alpha
Helix 13
AB4
A
250 275Right-handed alpha
Helix 14
AB5
A
275 281Right-handed alpha
Helix 15
AB6
A
284 322Right-handed alpha
Helix 16
AB7
A
324 335Right-handed alpha
Helix 17
AB8
A
349 377Right-handed alpha
Helix 18
AB9
A
380 403Right-handed alpha
Helix 19
AC1
A
478 487Right-handed alpha
Helix 20
AC2
A
518 524Right-handed alpha
Helix 21
AC3
A
528 535Right-handed alpha
Helix 22
AC4
A
538 549Right-handed alpha
Helix 23
AC5
A
566 570Right-handed 310
Helix 24
AC6
A
572 588Right-handed alpha
Helix 25
AC7
A
602 617Right-handed alpha
Helix 26
AC8
A
626 632Right-handed alpha
Helix 27
AC9
B
60 75Right-handed alpha
Helix 28
AD1
B
80 82Right-handed 310
Helix 29
AD2
B
83 89Right-handed alpha
Helix 30
AD3
B
89 94Right-handed alpha
Helix 31
AD4
B
95 116Right-handed alpha
Helix 32
AD5
B
118 131Right-handed alpha
Helix 33
AD6
B
132 167Right-handed alpha
Helix 34
AD7
B
170 177Right-handed alpha
Helix 35
AD8
B
184 189Right-handed alpha
Helix 36
AD9
B
190 207Right-handed alpha
Helix 37
AE1
B
208 218Right-handed alpha
Helix 38
AE2
B
227 248Right-handed alpha
Helix 39
AE3
B
250 275Right-handed alpha
Helix 40
AE4
B
275 281Right-handed alpha
Helix 41
AE5
B
284 322Right-handed alpha
Helix 42
AE6
B
324 335Right-handed alpha
Helix 43
AE7
B
349 377Right-handed alpha
Helix 44
AE8
B
380 403Right-handed alpha
Helix 45
AE9
B
478 487Right-handed alpha
Helix 46
AF1
B
518 524Right-handed alpha
Helix 47
AF2
B
528 535Right-handed alpha
Helix 48
AF3
B
538 549Right-handed alpha
Helix 49
AF4
B
566 570Right-handed 310
Helix 50
AF5
B
572 588Right-handed alpha
Helix 51
AF6
B
602 617Right-handed alpha
Helix 52
AF7
B
626 632Right-handed alpha
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There are 4 sheets in PDB entry 9NGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 435first strand
Strand 2
A
493 499parallel
Strand 3
A
440 443anti-parallel
Strand 4
A
460 463anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 508first strand
Strand 2
A
591 594parallel
Strand 3
A
619 622parallel
Strand 4
A
468 472parallel
Strand 5
A
635 638parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 435first strand
Strand 2
B
493 499parallel
Strand 3
B
440 443anti-parallel
Strand 4
B
460 463anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
505 508first strand
Strand 2
B
591 594parallel
Strand 3
B
619 622parallel
Strand 4
B
468 472parallel
Strand 5
B
635 638parallel
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