Analysis of interatomic Contacts of Structural Units in PDB entry:
9NGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NGZ entry

There are 2 chains in PDB entry 9NGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 47THR 763
B
 LYS 47THR 763
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9NGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 56Right-handed alpha
Helix 2
AA2
A
63 89Right-handed alpha
Helix 3
AA3
A
93 107Right-handed alpha
Helix 4
AA4
A
108 111Right-handed 310
Helix 5
AA5
A
121 140Right-handed alpha
Helix 6
AA6
A
144 166Right-handed alpha
Helix 7
AA7
A
168 175Right-handed 310
Helix 8
AA8
A
176 200Right-handed alpha
Helix 9
AA9
A
202 206Right-handed 310
Helix 10
AB1
A
211 223Right-handed alpha
Helix 11
AB2
A
228 254Right-handed alpha
Helix 12
AB3
A
258 267Right-handed alpha
Helix 13
AB4
A
267 285Right-handed alpha
Helix 14
AB5
A
316 324Right-handed alpha
Helix 15
AB6
A
326 350Right-handed alpha
Helix 16
AB7
A
354 370Right-handed alpha
Helix 17
AB8
A
371 373Right-handed 310
Helix 18
AB9
A
380 390Right-handed alpha
Helix 19
AC1
A
396 412Right-handed alpha
Helix 20
AC2
A
414 418Right-handed 310
Helix 21
AC3
A
420 433Right-handed alpha
Helix 22
AC4
A
434 436Right-handed 310
Helix 23
AC5
A
438 449Right-handed alpha
Helix 24
AC6
A
449 466Right-handed alpha
Helix 25
AC7
A
467 488Right-handed alpha
Helix 26
AC8
A
553 563Right-handed alpha
Helix 27
AC9
A
617 636Right-handed alpha
Helix 28
AD1
A
648 658Right-handed alpha
Helix 29
AD2
A
747 761Right-handed alpha
Helix 30
AD3
B
51 56Right-handed alpha
Helix 31
AD4
B
63 89Right-handed alpha
Helix 32
AD5
B
93 107Right-handed alpha
Helix 33
AD6
B
108 111Right-handed 310
Helix 34
AD7
B
121 140Right-handed alpha
Helix 35
AD8
B
144 166Right-handed alpha
Helix 36
AD9
B
168 175Right-handed 310
Helix 37
AE1
B
176 200Right-handed alpha
Helix 38
AE2
B
202 206Right-handed 310
Helix 39
AE3
B
211 223Right-handed alpha
Helix 40
AE4
B
228 254Right-handed alpha
Helix 41
AE5
B
258 267Right-handed alpha
Helix 42
AE6
B
267 285Right-handed alpha
Helix 43
AE7
B
316 324Right-handed alpha
Helix 44
AE8
B
326 350Right-handed alpha
Helix 45
AE9
B
354 370Right-handed alpha
Helix 46
AF1
B
371 373Right-handed 310
Helix 47
AF2
B
380 390Right-handed alpha
Helix 48
AF3
B
396 412Right-handed alpha
Helix 49
AF4
B
414 418Right-handed 310
Helix 50
AF5
B
420 433Right-handed alpha
Helix 51
AF6
B
434 436Right-handed 310
Helix 52
AF7
B
438 449Right-handed alpha
Helix 53
AF8
B
449 466Right-handed alpha
Helix 54
AF9
B
467 488Right-handed alpha
Helix 55
AG1
B
553 563Right-handed alpha
Helix 56
AG2
B
617 636Right-handed alpha
Helix 57
AG3
B
648 658Right-handed alpha
Helix 58
AG4
B
747 761Right-handed alpha
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There are 4 sheets in PDB entry 9NGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
378 379anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 514first strand
Strand 2
A
493 499anti-parallel
Strand 3
A
537 539anti-parallel
Strand 4
A
605 609parallel
Strand 5
A
640 644parallel
Strand 6
A
744 745parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
378 379anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
510 514first strand
Strand 2
B
493 499anti-parallel
Strand 3
B
535 539anti-parallel
Strand 4
B
605 609parallel
Strand 5
B
640 644parallel
Strand 6
B
744 745parallel
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