Analysis of interatomic Contacts of Structural Units in PDB entry:
9NH8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NH8 entry

There are 13 chains in PDB entry 9NH8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	ARG 134
B	ARG 17	GLY 102
C	ARG 11	LYS 118
D	LYS 28	LYS 122
E	HIS 39	ALA 135
F	ASN 25	GLY 102
G	ALA 14	LYS 118
H	THR 29	ALA 121
I	T -79	C 76
J	G -76	A 79
V	ALA 1	THR 3
V	GLN 5	GLN 5
W	GLU 267	ASN 1075

There are 73 helices in PDB entry 9NH8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	77	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	24	29	Right-handed 310
Helix 6	AA6	B	30	42	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	93	Right-handed alpha
Helix 9	AA9	C	16	22	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	46	73	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	D	34	46	Right-handed alpha
Helix 15	AB6	D	52	77	Right-handed alpha
Helix 16	AB7	D	87	99	Right-handed alpha
Helix 17	AB8	D	101	120	Right-handed alpha
Helix 18	AB9	E	44	57	Right-handed alpha
Helix 19	AC1	E	63	77	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	120	131	Right-handed alpha
Helix 22	AC4	F	25	29	Right-handed 310
Helix 23	AC5	F	30	42	Right-handed alpha
Helix 24	AC6	F	49	76	Right-handed alpha
Helix 25	AC7	F	82	94	Right-handed alpha
Helix 26	AC8	G	16	22	Right-handed alpha
Helix 27	AC9	G	26	37	Right-handed alpha
Helix 28	AD1	G	46	73	Right-handed alpha
Helix 29	AD2	G	79	90	Right-handed alpha
Helix 30	AD3	G	90	97	Right-handed alpha
Helix 31	AD4	H	34	46	Right-handed alpha
Helix 32	AD5	H	52	81	Right-handed alpha
Helix 33	AD6	H	87	99	Right-handed alpha
Helix 34	AD7	H	100	121	Right-handed alpha
Helix 35	AD8	W	293	301	Right-handed alpha
Helix 36	AD9	W	335	341	Right-handed alpha
Helix 37	AE1	W	346	364	Right-handed alpha
Helix 38	AE2	W	367	388	Right-handed alpha
Helix 39	AE3	W	406	409	Right-handed 310
Helix 40	AE4	W	417	421	Right-handed 310
Helix 41	AE5	W	428	433	Right-handed alpha
Helix 42	AE6	W	433	446	Right-handed alpha
Helix 43	AE7	W	470	474	Right-handed 310
Helix 44	AE8	W	482	498	Right-handed alpha
Helix 45	AE9	W	509	512	Right-handed 310
Helix 46	AF1	W	513	520	Right-handed alpha
Helix 47	AF2	W	538	552	Right-handed alpha
Helix 48	AF3	W	564	575	Right-handed alpha
Helix 49	AF4	W	592	599	Right-handed alpha
Helix 50	AF5	W	599	605	Right-handed alpha
Helix 51	AF6	W	615	620	Right-handed 310
Helix 52	AF7	W	624	632	Right-handed alpha
Helix 53	AF8	W	649	661	Right-handed alpha
Helix 54	AF9	W	671	676	Right-handed alpha
Helix 55	AG1	W	680	685	Right-handed 310
Helix 56	AG2	W	698	703	Right-handed alpha
Helix 57	AG3	W	719	733	Right-handed alpha
Helix 58	AG4	W	733	738	Right-handed alpha
Helix 59	AG5	W	739	743	Right-handed 310
Helix 60	AG6	W	744	760	Right-handed alpha
Helix 61	AG7	W	761	765	Right-handed 310
Helix 62	AG8	W	769	774	Right-handed alpha
Helix 63	AG9	W	775	787	Right-handed alpha
Helix 64	AH1	W	790	804	Right-handed alpha
Helix 65	AH2	W	813	828	Right-handed alpha
Helix 66	AH3	W	839	852	Right-handed alpha
Helix 67	AH4	W	863	870	Right-handed 310
Helix 68	AH5	W	887	897	Right-handed alpha
Helix 69	AH6	W	919	927	Right-handed alpha
Helix 70	AH7	W	961	972	Right-handed alpha
Helix 71	AH8	W	994	999	Right-handed alpha
Helix 72	AH9	W	1042	1047	Right-handed alpha
Helix 73	AI1	W	1049	1069	Right-handed alpha

There are 14 sheets in PDB entry 9NH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	274	276	first strand
Strand 2	W	321	322	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	391	394	first strand
Strand 2	W	411	413	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	502	504	first strand
Strand 2	W	638	641	parallel
Strand 3	W	610	613	parallel
Strand 4	W	533	536	parallel
Strand 5	W	588	591	parallel
Strand 6	W	558	560	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	712	715	first strand
Strand 2	W	908	913	parallel
Strand 3	W	878	881	parallel
Strand 4	W	807	810	parallel
Strand 5	W	859	862	parallel
Strand 6	W	831	833	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NH8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NH8