Analysis of interatomic Contacts of Structural Units in PDB entry:
9NHE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NHE entry

There are 4 chains in PDB entry 9NHE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 142	LEU 899
B	U 1	G 22
C	C 4	A 25
F	GLN 86	PHE 344

There are 34 helices in PDB entry 9NHE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	181	190	Right-handed alpha
Helix 2	AA2	A	192	197	Right-handed alpha
Helix 3	AA3	A	246	262	Right-handed alpha
Helix 4	AA4	A	281	283	Right-handed 310
Helix 5	AA5	A	317	329	Right-handed alpha
Helix 6	AA6	A	333	342	Right-handed alpha
Helix 7	AA7	A	379	388	Right-handed alpha
Helix 8	AA8	A	404	410	Right-handed alpha
Helix 9	AA9	A	419	421	Right-handed 310
Helix 10	AB1	A	431	434	Right-handed 310
Helix 11	AB2	A	435	447	Right-handed alpha
Helix 12	AB3	A	449	467	Right-handed alpha
Helix 13	AB4	A	467	477	Right-handed alpha
Helix 14	AB5	A	513	522	Right-handed 310
Helix 15	AB6	A	541	560	Right-handed alpha
Helix 16	AB7	A	575	590	Right-handed alpha
Helix 17	AB8	A	604	616	Right-handed alpha
Helix 18	AB9	A	634	650	Right-handed alpha
Helix 19	AC1	A	712	729	Right-handed alpha
Helix 20	AC2	A	743	745	Right-handed 310
Helix 21	AC3	A	746	752	Right-handed alpha
Helix 22	AC4	A	754	767	Right-handed alpha
Helix 23	AC5	A	842	853	Right-handed alpha
Helix 24	AC6	A	867	880	Right-handed alpha
Helix 25	AC7	A	889	893	Right-handed 310
Helix 26	AC8	F	87	110	Right-handed alpha
Helix 27	AC9	F	112	115	Right-handed 310
Helix 28	AD1	F	166	178	Right-handed alpha
Helix 29	AD2	F	190	199	Right-handed alpha
Helix 30	AD3	F	218	233	Right-handed alpha
Helix 31	AD4	F	248	260	Right-handed alpha
Helix 32	AD5	F	271	279	Right-handed alpha
Helix 33	AD6	F	290	296	Right-handed alpha
Helix 34	AD7	F	302	323	Right-handed alpha

There are 11 sheets in PDB entry 9NHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	488	first strand
Strand 2	A	153	155	anti-parallel
Strand 3	A	786	790	anti-parallel
Strand 4	A	793	795	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	270	272	anti-parallel
Strand 3	A	285	297	anti-parallel
Strand 4	A	278	280	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	270	272	anti-parallel
Strand 3	A	285	297	anti-parallel
Strand 4	A	302	314	anti-parallel
Strand 5	A	157	162	anti-parallel
Strand 6	A	480	481	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	208	first strand
Strand 2	A	169	175	anti-parallel
Strand 3	A	229	236	anti-parallel
Strand 4	A	219	222	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	423	425	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	372	first strand
Strand 2	A	375	378	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	402	first strand
Strand 2	A	415	418	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	492	first strand
Strand 2	A	801	803	anti-parallel
Strand 3	A	816	818	anti-parallel
Strand 4	A	830	833	anti-parallel
Strand 5	A	773	779	anti-parallel
Strand 6	A	735	740	parallel
Strand 7	A	665	668	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	500	first strand
Strand 2	A	504	507	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	571	first strand
Strand 2	A	533	538	parallel
Strand 3	A	594	598	parallel
Strand 4	A	622	625	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	156	first strand
Strand 2	F	135	144	anti-parallel
Strand 3	F	117	125	anti-parallel
Strand 4	F	215	217	parallel
Strand 5	F	245	247	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NHE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NHE