Analysis of interatomic Contacts of Structural Units in PDB entry:
9NHS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NHS entry

There are 6 chains in PDB entry 9NHS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 142	LEU 899
B	U 1	U 24
C	A -1	A 25
E	MET 1	GLU 149
F	GLY 69	ALA 352
G	MET 1	PHE 1438

There are 83 helices in PDB entry 9NHS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	181	190	Right-handed alpha
Helix 2	AA2	A	192	197	Right-handed alpha
Helix 3	AA3	A	246	261	Right-handed alpha
Helix 4	AA4	A	317	329	Right-handed alpha
Helix 5	AA5	A	333	342	Right-handed alpha
Helix 6	AA6	A	379	387	Right-handed alpha
Helix 7	AA7	A	404	409	Right-handed alpha
Helix 8	AA8	A	429	433	Right-handed 310
Helix 9	AA9	A	435	447	Right-handed alpha
Helix 10	AB1	A	449	467	Right-handed alpha
Helix 11	AB2	A	467	477	Right-handed alpha
Helix 12	AB3	A	500	504	Right-handed 310
Helix 13	AB4	A	515	520	Right-handed alpha
Helix 14	AB5	A	541	559	Right-handed alpha
Helix 15	AB6	A	575	591	Right-handed alpha
Helix 16	AB7	A	604	616	Right-handed alpha
Helix 17	AB8	A	627	632	Right-handed alpha
Helix 18	AB9	A	634	651	Right-handed alpha
Helix 19	AC1	A	712	729	Right-handed alpha
Helix 20	AC2	A	743	745	Right-handed 310
Helix 21	AC3	A	746	754	Right-handed alpha
Helix 22	AC4	A	754	767	Right-handed alpha
Helix 23	AC5	A	842	853	Right-handed alpha
Helix 24	AC6	A	867	883	Right-handed alpha
Helix 25	AC7	A	889	893	Right-handed 310
Helix 26	AC8	E	28	38	Right-handed alpha
Helix 27	AC9	E	60	65	Right-handed alpha
Helix 28	AD1	E	66	68	Right-handed 310
Helix 29	AD2	E	71	78	Right-handed alpha
Helix 30	AD3	E	114	119	Right-handed alpha
Helix 31	AD4	E	130	135	Right-handed alpha
Helix 32	AD5	E	137	144	Right-handed alpha
Helix 33	AD6	F	78	110	Right-handed alpha
Helix 34	AD7	F	166	178	Right-handed alpha
Helix 35	AD8	F	190	199	Right-handed alpha
Helix 36	AD9	F	221	233	Right-handed alpha
Helix 37	AE1	F	248	260	Right-handed alpha
Helix 38	AE2	F	269	279	Right-handed alpha
Helix 39	AE3	F	290	296	Right-handed alpha
Helix 40	AE4	F	298	301	Right-handed 310
Helix 41	AE5	F	302	323	Right-handed alpha
Helix 42	AE6	F	337	350	Right-handed alpha
Helix 43	AE7	G	2	10	Right-handed alpha
Helix 44	AE8	G	43	48	Right-handed 310
Helix 45	AE9	G	536	547	Right-handed alpha
Helix 46	AF1	G	550	557	Right-handed alpha
Helix 47	AF2	G	563	578	Right-handed alpha
Helix 48	AF3	G	596	605	Right-handed alpha
Helix 49	AF4	G	608	622	Right-handed alpha
Helix 50	AF5	G	623	635	Right-handed alpha
Helix 51	AF6	G	647	657	Right-handed alpha
Helix 52	AF7	G	663	681	Right-handed alpha
Helix 53	AF8	G	690	696	Right-handed 310
Helix 54	AF9	G	700	721	Right-handed alpha
Helix 55	AG1	G	736	749	Right-handed alpha
Helix 56	AG2	G	761	771	Right-handed alpha
Helix 57	AG3	G	775	777	Right-handed 310
Helix 58	AG4	G	790	793	Right-handed 310
Helix 59	AG5	G	794	807	Right-handed alpha
Helix 60	AG6	G	832	840	Right-handed alpha
Helix 61	AG7	G	849	860	Right-handed alpha
Helix 62	AG8	G	871	873	Right-handed 310
Helix 63	AG9	G	874	886	Right-handed alpha
Helix 64	AH1	G	890	895	Right-handed alpha
Helix 65	AH2	G	926	941	Right-handed alpha
Helix 66	AH3	G	1007	1012	Right-handed alpha
Helix 67	AH4	G	1037	1049	Right-handed alpha
Helix 68	AH5	G	1077	1085	Right-handed alpha
Helix 69	AH6	G	1094	1106	Right-handed alpha
Helix 70	AH7	G	1107	1110	Right-handed 310
Helix 71	AH8	G	1111	1126	Right-handed alpha
Helix 72	AH9	G	1162	1166	Right-handed 310
Helix 73	AI1	G	1176	1180	Right-handed 310
Helix 74	AI2	G	1221	1230	Right-handed alpha
Helix 75	AI3	G	1262	1266	Right-handed 310
Helix 76	AI4	G	1276	1295	Right-handed alpha
Helix 77	AI5	G	1308	1326	Right-handed alpha
Helix 78	AI6	G	1356	1363	Right-handed alpha
Helix 79	AI7	G	1378	1389	Right-handed alpha
Helix 80	AI8	G	1389	1394	Right-handed alpha
Helix 81	AI9	G	1394	1399	Right-handed alpha
Helix 82	AJ1	G	1418	1426	Right-handed alpha
Helix 83	AJ2	G	1430	1438	Right-handed alpha

There are 23 sheets in PDB entry 9NHS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	696	703	first strand
Strand 2	A	677	688	anti-parallel
Strand 3	A	664	674	anti-parallel
Strand 4	A	734	739	parallel
Strand 5	A	772	779	parallel
Strand 6	A	830	837	anti-parallel
Strand 7	A	814	818	anti-parallel
Strand 8	A	801	803	anti-parallel
Strand 9	A	487	492	anti-parallel
Strand 10	A	149	154	anti-parallel
Strand 11	A	787	789	anti-parallel
Strand 12	A	794	795	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	302	305	anti-parallel
Strand 3	A	294	297	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	208	first strand
Strand 2	A	168	175	anti-parallel
Strand 3	A	229	240	anti-parallel
Strand 4	A	219	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	270	272	anti-parallel
Strand 3	A	285	291	anti-parallel
Strand 4	A	278	280	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	270	272	anti-parallel
Strand 3	A	285	291	anti-parallel
Strand 4	A	308	314	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	345	347	anti-parallel
Strand 3	A	424	425	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	371	first strand
Strand 2	A	376	378	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	402	first strand
Strand 2	A	415	418	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	498	first strand
Strand 2	A	506	507	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	570	first strand
Strand 2	A	533	537	parallel
Strand 3	A	594	599	parallel
Strand 4	A	622	626	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	23	25	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	55	57	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	80	first strand
Strand 2	G	19	20	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	129	first strand
Strand 2	F	132	144	anti-parallel
Strand 3	F	148	156	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	217	first strand
Strand 2	F	245	247	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1158	1159	first strand
Strand 2	G	753	756	anti-parallel
Strand 3	G	1192	1201	anti-parallel
Strand 4	G	1208	1215	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	811	814	first strand
Strand 2	G	821	824	anti-parallel
Strand 3	G	779	782	anti-parallel
Strand 4	G	1150	1151	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	866	869	first strand
Strand 2	G	1143	1146	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	908	912	first strand
Strand 2	G	918	923	anti-parallel
Strand 3	G	1016	1021	anti-parallel
Strand 4	G	1065	1070	parallel
Strand 5	G	1054	1057	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	956	961	first strand
Strand 2	G	968	978	anti-parallel
Strand 3	G	982	986	anti-parallel
Strand 4	G	993	997	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1024	1026	first strand
Strand 2	G	1088	1090	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1233	1238	first strand
Strand 2	G	1245	1251	anti-parallel
Strand 3	G	1267	1270	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1407	1409	first strand
Strand 2	G	1414	1417	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NHS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NHS