Analysis of interatomic Contacts of Structural Units in PDB entry:
9NHZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NHZ entry

There are 4 chains in PDB entry 9NHZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 22	LEU 910
B	GLU 22	LEU 910
C	GLU 22	LEU 910
D	GLU 22	LEU 910

There are146 helices in PDB entry 9NHZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	32	Right-handed alpha
Helix 2	AA2	A	34	43	Right-handed alpha
Helix 3	AA3	A	50	62	Right-handed alpha
Helix 4	AA4	A	73	83	Right-handed alpha
Helix 5	AA5	A	84	102	Right-handed alpha
Helix 6	AA6	A	112	135	Right-handed alpha
Helix 7	AA7	A	166	168	Right-handed 310
Helix 8	AA8	A	198	203	Right-handed alpha
Helix 9	AA9	A	247	250	Right-handed 310
Helix 10	AB1	A	251	258	Right-handed alpha
Helix 11	AB2	A	268	299	Right-handed alpha
Helix 12	AB3	A	302	316	Right-handed alpha
Helix 13	AB4	A	320	339	Right-handed alpha
Helix 14	AB5	A	347	354	Right-handed alpha
Helix 15	AB6	A	384	397	Right-handed alpha
Helix 16	AB7	A	403	416	Right-handed alpha
Helix 17	AB8	A	420	424	Right-handed 310
Helix 18	AB9	A	425	429	Right-handed 310
Helix 19	AC1	A	467	474	Right-handed alpha
Helix 20	AC2	A	488	505	Right-handed alpha
Helix 21	AC3	A	520	524	Right-handed 310
Helix 22	AC4	A	547	558	Right-handed alpha
Helix 23	AC5	A	569	581	Right-handed alpha
Helix 24	AC6	A	589	596	Right-handed alpha
Helix 25	AC7	A	597	606	Right-handed alpha
Helix 26	AC8	A	615	630	Right-handed alpha
Helix 27	AC9	A	639	641	Right-handed 310
Helix 28	AD1	A	642	649	Right-handed alpha
Helix 29	AD2	A	659	666	Right-handed alpha
Helix 30	AD3	A	674	713	Right-handed alpha
Helix 31	AD4	A	723	738	Right-handed alpha
Helix 32	AD5	A	739	744	Right-handed 310
Helix 33	AD6	A	759	770	Right-handed alpha
Helix 34	AD7	A	770	787	Right-handed alpha
Helix 35	AD8	A	787	793	Right-handed alpha
Helix 36	AD9	A	803	828	Right-handed alpha
Helix 37	AE1	A	828	833	Right-handed alpha
Helix 38	AE2	A	845	862	Right-handed alpha
Helix 39	AE3	A	865	872	Right-handed alpha
Helix 40	AE4	A	879	907	Right-handed alpha
Helix 41	AE5	B	25	33	Right-handed alpha
Helix 42	AE6	B	36	42	Right-handed alpha
Helix 43	AE7	B	52	62	Right-handed alpha
Helix 44	AE8	B	73	82	Right-handed alpha
Helix 45	AE9	B	84	101	Right-handed alpha
Helix 46	AF1	B	112	134	Right-handed alpha
Helix 47	AF2	B	251	256	Right-handed alpha
Helix 48	AF3	B	267	300	Right-handed alpha
Helix 49	AF4	B	301	317	Right-handed alpha
Helix 50	AF5	B	320	338	Right-handed alpha
Helix 51	AF6	B	347	354	Right-handed alpha
Helix 52	AF7	B	386	396	Right-handed alpha
Helix 53	AF8	B	403	419	Right-handed alpha
Helix 54	AF9	B	453	457	Right-handed 310
Helix 55	AG1	B	491	506	Right-handed alpha
Helix 56	AG2	B	547	558	Right-handed alpha
Helix 57	AG3	B	569	581	Right-handed alpha
Helix 58	AG4	B	589	596	Right-handed alpha
Helix 59	AG5	B	597	608	Right-handed alpha
Helix 60	AG6	B	615	630	Right-handed alpha
Helix 61	AG7	B	643	649	Right-handed alpha
Helix 62	AG8	B	661	665	Right-handed 310
Helix 63	AG9	B	676	713	Right-handed alpha
Helix 64	AH1	B	723	738	Right-handed alpha
Helix 65	AH2	B	739	744	Right-handed 310
Helix 66	AH3	B	758	770	Right-handed alpha
Helix 67	AH4	B	770	787	Right-handed alpha
Helix 68	AH5	B	788	793	Right-handed alpha
Helix 69	AH6	B	803	828	Right-handed alpha
Helix 70	AH7	B	828	833	Right-handed alpha
Helix 71	AH8	B	837	842	Right-handed alpha
Helix 72	AH9	B	845	862	Right-handed alpha
Helix 73	AI1	B	865	872	Right-handed alpha
Helix 74	AI2	B	879	907	Right-handed alpha
Helix 75	AI3	C	27	32	Right-handed alpha
Helix 76	AI4	C	34	41	Right-handed alpha
Helix 77	AI5	C	50	56	Right-handed alpha
Helix 78	AI6	C	74	82	Right-handed alpha
Helix 79	AI7	C	84	101	Right-handed alpha
Helix 80	AI8	C	112	134	Right-handed alpha
Helix 81	AI9	C	269	300	Right-handed alpha
Helix 82	AJ1	C	303	317	Right-handed alpha
Helix 83	AJ2	C	320	326	Right-handed alpha
Helix 84	AJ3	C	328	338	Right-handed alpha
Helix 85	AJ4	C	347	355	Right-handed alpha
Helix 86	AJ5	C	384	397	Right-handed alpha
Helix 87	AJ6	C	403	420	Right-handed alpha
Helix 88	AJ7	C	421	424	Right-handed 310
Helix 89	AJ8	C	488	504	Right-handed alpha
Helix 90	AJ9	C	520	524	Right-handed 310
Helix 91	AK1	C	548	558	Right-handed alpha
Helix 92	AK2	C	569	581	Right-handed alpha
Helix 93	AK3	C	590	594	Right-handed alpha
Helix 94	AK4	C	597	608	Right-handed alpha
Helix 95	AK5	C	615	630	Right-handed alpha
Helix 96	AK6	C	639	649	Right-handed alpha
Helix 97	AK7	C	659	665	Right-handed alpha
Helix 98	AK8	C	675	713	Right-handed alpha
Helix 99	AK9	C	723	738	Right-handed alpha
Helix 100	AL1	C	739	744	Right-handed 310
Helix 101	AL2	C	747	751	Right-handed 310
Helix 102	AL3	C	758	770	Right-handed alpha
Helix 103	AL4	C	770	787	Right-handed alpha
Helix 104	AL5	C	788	793	Right-handed alpha
Helix 105	AL6	C	803	828	Right-handed alpha
Helix 106	AL7	C	828	833	Right-handed alpha
Helix 107	AL8	C	845	862	Right-handed alpha
Helix 108	AL9	C	865	872	Right-handed alpha
Helix 109	AM1	C	880	907	Right-handed alpha
Helix 110	AM2	D	23	28	Right-handed alpha
Helix 111	AM3	D	36	42	Right-handed alpha
Helix 112	AM4	D	51	62	Right-handed alpha
Helix 113	AM5	D	73	82	Right-handed alpha
Helix 114	AM6	D	84	102	Right-handed alpha
Helix 115	AM7	D	112	134	Right-handed alpha
Helix 116	AM8	D	141	146	Right-handed alpha
Helix 117	AM9	D	251	256	Right-handed alpha
Helix 118	AN1	D	257	260	Right-handed 310
Helix 119	AN2	D	268	300	Right-handed alpha
Helix 120	AN3	D	301	316	Right-handed alpha
Helix 121	AN4	D	320	339	Right-handed alpha
Helix 122	AN5	D	347	354	Right-handed alpha
Helix 123	AN6	D	384	398	Right-handed alpha
Helix 124	AN7	D	403	417	Right-handed alpha
Helix 125	AN8	D	418	420	Right-handed 310
Helix 126	AN9	D	439	443	Right-handed 310
Helix 127	AO1	D	450	454	Right-handed 310
Helix 128	AO2	D	490	505	Right-handed alpha
Helix 129	AO3	D	526	531	Right-handed alpha
Helix 130	AO4	D	547	558	Right-handed alpha
Helix 131	AO5	D	569	581	Right-handed alpha
Helix 132	AO6	D	590	596	Right-handed alpha
Helix 133	AO7	D	597	607	Right-handed alpha
Helix 134	AO8	D	615	630	Right-handed alpha
Helix 135	AO9	D	642	648	Right-handed alpha
Helix 136	AP1	D	659	665	Right-handed alpha
Helix 137	AP2	D	676	713	Right-handed alpha
Helix 138	AP3	D	723	738	Right-handed alpha
Helix 139	AP4	D	739	744	Right-handed 310
Helix 140	AP5	D	747	751	Right-handed 310
Helix 141	AP6	D	758	787	Right-handed alpha
Helix 142	AP7	D	788	794	Right-handed alpha
Helix 143	AP8	D	803	833	Right-handed alpha
Helix 144	AP9	D	845	862	Right-handed alpha
Helix 145	AQ1	D	865	872	Right-handed alpha
Helix 146	AQ2	D	880	907	Right-handed alpha

There are 19 sheets in PDB entry 9NHZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	164	first strand
Strand 2	A	150	155	anti-parallel
Strand 3	A	173	176	anti-parallel
Strand 4	A	234	246	anti-parallel
Strand 5	A	185	197	anti-parallel
Strand 6	A	207	210	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	164	first strand
Strand 2	A	150	155	anti-parallel
Strand 3	A	173	176	anti-parallel
Strand 4	A	234	246	anti-parallel
Strand 5	A	185	197	anti-parallel
Strand 6	A	228	229	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	668	670	anti-parallel
Strand 3	A	651	655	parallel
Strand 4	A	633	636	parallel
Strand 5	A	357	360	parallel
Strand 6	A	561	564	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	377	first strand
Strand 2	A	533	541	anti-parallel
Strand 3	A	508	516	anti-parallel
Strand 4	A	461	466	anti-parallel
Strand 5	A	444	450	anti-parallel
Strand 6	A	431	436	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	377	first strand
Strand 2	A	533	541	anti-parallel
Strand 3	A	477	480	parallel
Strand 4	A	483	486	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	240	242	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	234	237	anti-parallel
Strand 3	B	195	197	anti-parallel
Strand 4	B	207	208	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	564	first strand
Strand 2	B	357	360	parallel
Strand 3	B	633	637	parallel
Strand 4	B	652	654	parallel
Strand 5	B	668	669	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	480	first strand
Strand 2	B	483	484	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	B	538	540	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	152	first strand
Strand 2	C	162	163	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	196	first strand
Strand 2	C	208	209	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	343	first strand
Strand 2	C	668	670	anti-parallel
Strand 3	C	651	655	parallel
Strand 4	C	633	637	parallel
Strand 5	C	357	360	parallel
Strand 6	C	561	564	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	509	510	first strand
Strand 2	C	538	539	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	588	589	first strand
Strand 2	C	611	612	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	196	first strand
Strand 2	D	208	209	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	343	first strand
Strand 2	D	668	670	anti-parallel
Strand 3	D	652	654	parallel
Strand 4	D	633	637	parallel
Strand 5	D	357	360	parallel
Strand 6	D	561	565	parallel
Strand 7	D	610	612	parallel
Strand 8	D	587	589	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	373	first strand
Strand 2	D	537	541	anti-parallel
Strand 3	D	508	511	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	448	first strand
Strand 2	D	462	464	anti-parallel
Strand 3	D	513	514	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NHZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NHZ