Analysis of interatomic Contacts of Structural Units in PDB entry:
9NII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NII entry

There are 6 chains in PDB entry 9NII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	MET 1	PRO 220
H	GLY 3	ASP 254
A	MET 1	GLU 221
B	GLY 3	ASP 254
C	GLN 2	PRO 220
D	GLY 3	THR 242

There are 22 helices in PDB entry 9NII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	95	99	Right-handed 310
Helix 2	AA2	G	201	205	Right-handed 310
Helix 3	AA3	H	95	99	Right-handed 310
Helix 4	AA4	H	141	149	Right-handed alpha
Helix 5	AA5	H	208	213	Right-handed alpha
Helix 6	AA6	A	95	99	Right-handed 310
Helix 7	AA7	A	110	114	Right-handed 310
Helix 8	AA8	A	201	206	Right-handed alpha
Helix 9	AA9	B	95	99	Right-handed 310
Helix 10	AB1	B	126	130	Right-handed 310
Helix 11	AB2	B	141	149	Right-handed alpha
Helix 12	AB3	B	208	212	Right-handed alpha
Helix 13	AB4	C	95	99	Right-handed 310
Helix 14	AB5	D	95	99	Right-handed 310
Helix 15	AB6	D	126	130	Right-handed 310
Helix 16	AB7	D	141	149	Right-handed alpha
Helix 17	AB8	D	208	212	Right-handed alpha
Helix 18	AB9	E	95	99	Right-handed 310
Helix 19	AC1	F	95	99	Right-handed 310
Helix 20	AC2	F	126	130	Right-handed 310
Helix 21	AC3	F	141	149	Right-handed alpha
Helix 22	AC4	F	208	212	Right-handed alpha

There are 41 sheets in PDB entry 9NII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	86	91	anti-parallel
Strand 4	G	76	80	anti-parallel
Strand 5	G	64	67	anti-parallel
Strand 6	E	10	14	parallel
Strand 7	E	123	128	parallel
Strand 8	E	100	107	anti-parallel
Strand 9	E	39	44	anti-parallel
Strand 10	E	50	56	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	86	91	anti-parallel
Strand 4	G	76	80	anti-parallel
Strand 5	G	64	67	anti-parallel
Strand 6	E	10	14	parallel
Strand 7	E	123	128	parallel
Strand 8	E	100	107	anti-parallel
Strand 9	E	117	119	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	123	128	parallel
Strand 3	G	100	107	anti-parallel
Strand 4	G	39	44	anti-parallel
Strand 5	G	50	56	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	123	128	parallel
Strand 3	G	100	107	anti-parallel
Strand 4	G	117	119	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	137	142	first strand
Strand 2	G	150	155	anti-parallel
Strand 3	G	190	195	anti-parallel
Strand 4	G	171	173	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	179	first strand
Strand 2	H	180	182	anti-parallel
Strand 3	H	198	207	anti-parallel
Strand 4	H	150	160	anti-parallel
Strand 5	H	134	138	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	179	first strand
Strand 2	H	180	182	anti-parallel
Strand 3	H	198	207	anti-parallel
Strand 4	H	187	188	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	89	91	anti-parallel
Strand 4	H	76	78	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	119	124	parallel
Strand 3	H	100	107	anti-parallel
Strand 4	H	38	45	anti-parallel
Strand 5	H	49	58	anti-parallel
Strand 6	H	65	68	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	119	124	parallel
Strand 3	H	100	107	anti-parallel
Strand 4	H	114	115	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	174	176	first strand
Strand 2	H	165	171	anti-parallel
Strand 3	H	217	224	anti-parallel
Strand 4	H	243	250	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	86	91	anti-parallel
Strand 4	A	76	80	anti-parallel
Strand 5	A	66	68	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	123	128	parallel
Strand 3	A	100	107	anti-parallel
Strand 4	A	39	44	anti-parallel
Strand 5	A	50	56	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	123	128	parallel
Strand 3	A	100	107	anti-parallel
Strand 4	A	117	119	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	142	first strand
Strand 2	A	150	155	anti-parallel
Strand 3	A	190	194	anti-parallel
Strand 4	A	172	174	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	B	180	182	anti-parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	150	160	anti-parallel
Strand 5	B	134	138	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	B	180	182	anti-parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	187	188	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	89	91	anti-parallel
Strand 4	B	77	78	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	119	124	parallel
Strand 3	B	100	107	anti-parallel
Strand 4	B	38	45	anti-parallel
Strand 5	B	48	56	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	119	124	parallel
Strand 3	B	100	107	anti-parallel
Strand 4	B	114	115	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	217	224	anti-parallel
Strand 4	B	243	250	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	76	80	anti-parallel
Strand 5	C	65	66	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	123	128	parallel
Strand 3	C	100	107	anti-parallel
Strand 4	C	39	44	anti-parallel
Strand 5	C	50	56	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	123	128	parallel
Strand 3	C	100	107	anti-parallel
Strand 4	C	117	119	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	142	first strand
Strand 2	C	150	155	anti-parallel
Strand 3	C	189	195	anti-parallel
Strand 4	C	171	173	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	142	first strand
Strand 2	C	150	155	anti-parallel
Strand 3	C	189	195	anti-parallel
Strand 4	C	177	178	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	89	91	anti-parallel
Strand 4	D	76	78	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	119	124	parallel
Strand 3	D	100	107	anti-parallel
Strand 4	D	38	44	anti-parallel
Strand 5	D	51	58	anti-parallel
Strand 6	D	65	68	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	119	124	parallel
Strand 3	D	100	107	anti-parallel
Strand 4	D	114	115	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	150	160	anti-parallel
Strand 3	D	198	207	anti-parallel
Strand 4	D	180	182	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	138	first strand
Strand 2	D	150	160	anti-parallel
Strand 3	D	198	207	anti-parallel
Strand 4	D	187	188	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	176	first strand
Strand 2	D	165	171	anti-parallel
Strand 3	D	217	224	anti-parallel
Strand 4	D	243	250	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	86	91	anti-parallel
Strand 4	E	76	80	anti-parallel
Strand 5	E	65	68	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	142	first strand
Strand 2	E	150	157	anti-parallel
Strand 3	E	186	195	anti-parallel
Strand 4	E	171	173	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	142	first strand
Strand 2	E	150	157	anti-parallel
Strand 3	E	186	195	anti-parallel
Strand 4	E	177	181	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	89	91	anti-parallel
Strand 4	F	76	78	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	119	124	parallel
Strand 3	F	100	107	anti-parallel
Strand 4	F	38	43	anti-parallel
Strand 5	F	51	58	anti-parallel
Strand 6	F	65	68	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	119	124	parallel
Strand 3	F	100	107	anti-parallel
Strand 4	F	114	115	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	138	first strand
Strand 2	F	150	160	anti-parallel
Strand 3	F	198	207	anti-parallel
Strand 4	F	180	182	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	138	first strand
Strand 2	F	150	160	anti-parallel
Strand 3	F	198	207	anti-parallel
Strand 4	F	187	188	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	176	first strand
Strand 2	F	165	171	anti-parallel
Strand 3	F	217	224	anti-parallel
Strand 4	F	243	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NII

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NII