Analysis of interatomic Contacts of Structural Units in PDB entry:
9NJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NJ8 entry

There are 2 chains in PDB entry 9NJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 46ALA 259
B
 ASN 44ALA 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 9NJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 76Right-handed alpha
Helix 2
AA2
A
80 93Right-handed alpha
Helix 3
AA3
A
145 148Right-handed 310
Helix 4
AA4
A
149 156Right-handed alpha
Helix 5
AA5
A
201 215Right-handed alpha
Helix 6
AA6
B
46 76Right-handed alpha
Helix 7
AA7
B
80 92Right-handed alpha
Helix 8
AA8
B
136 140Right-handed 310
Helix 9
AA9
B
145 148Right-handed 310
Helix 10
AB1
B
149 155Right-handed alpha
Helix 11
AB2
B
201 216Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9NJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
122 125anti-parallel
Strand 3
A
99 106anti-parallel
Strand 4
A
190 200anti-parallel
Strand 5
A
177 187anti-parallel
Strand 6
A
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
122 125anti-parallel
Strand 3
A
99 106anti-parallel
Strand 4
A
190 200anti-parallel
Strand 5
A
177 187anti-parallel
Strand 6
A
169 170anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 232first strand
Strand 2
A
217 222anti-parallel
Strand 3
A
252 258anti-parallel
Strand 4
A
243 247anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
122 125anti-parallel
Strand 3
B
99 106anti-parallel
Strand 4
B
190 200anti-parallel
Strand 5
B
177 187anti-parallel
Strand 6
B
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
122 125anti-parallel
Strand 3
B
99 106anti-parallel
Strand 4
B
190 200anti-parallel
Strand 5
B
177 187anti-parallel
Strand 6
B
169 170anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 232first strand
Strand 2
B
217 222anti-parallel
Strand 3
B
252 258anti-parallel
Strand 4
B
243 247anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il