Analysis of interatomic Contacts of Structural Units in PDB entry:
9NJ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NJ9 entry

There are 9 chains in PDB entry 9NJ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	VAL 2	VAL 111
L	SER 2	VAL 106
P	GLU 9	VAL 111
Q	VAL 2	SER 112
A	PHE 41	GLU 298
B	PHE 41	GLU 298
C	HIS 40	GLU 298
J	VAL 2	VAL 109
K	GLU 9	VAL 111

There are 25 helices in PDB entry 9NJ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	83	87	Right-handed 310
Helix 2	AA2	P	85	89	Right-handed 310
Helix 3	AA3	Q	28	32	Right-handed 310
Helix 4	AA4	Q	61	64	Right-handed 310
Helix 5	AA5	Q	83	87	Right-handed 310
Helix 6	AA6	A	61	67	Right-handed alpha
Helix 7	AA7	A	98	102	Right-handed 310
Helix 8	AA8	A	103	105	Right-handed 310
Helix 9	AA9	A	106	112	Right-handed alpha
Helix 10	AB1	A	126	130	Right-handed 310
Helix 11	AB2	A	197	206	Right-handed alpha
Helix 12	AB3	B	61	68	Right-handed alpha
Helix 13	AB4	B	98	102	Right-handed 310
Helix 14	AB5	B	103	105	Right-handed 310
Helix 15	AB6	B	106	112	Right-handed alpha
Helix 16	AB7	B	126	130	Right-handed 310
Helix 17	AB8	B	197	206	Right-handed alpha
Helix 18	AB9	C	61	67	Right-handed alpha
Helix 19	AC1	C	98	102	Right-handed 310
Helix 20	AC2	C	103	105	Right-handed 310
Helix 21	AC3	C	106	112	Right-handed alpha
Helix 22	AC4	C	197	206	Right-handed alpha
Helix 23	AC5	J	28	32	Right-handed 310
Helix 24	AC6	J	83	87	Right-handed 310
Helix 25	AC7	K	32	35	Right-handed 310

There are 34 sheets in PDB entry 9NJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	95	anti-parallel
Strand 5	H	100	103	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	95	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	11	first strand
Strand 2	L	102	104	parallel
Strand 3	L	85	87	anti-parallel
Strand 4	L	35	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	90	92	first strand
Strand 2	L	95	97	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	12	13	first strand
Strand 2	P	25	30	anti-parallel
Strand 3	P	76	81	anti-parallel
Strand 4	P	68	73	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	16	17	first strand
Strand 2	P	108	109	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	51	54	first strand
Strand 2	P	40	44	anti-parallel
Strand 3	P	91	97	anti-parallel
Strand 4	P	102	104	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	3	6	first strand
Strand 2	Q	18	25	anti-parallel
Strand 3	Q	77	82	anti-parallel
Strand 4	Q	67	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	12	first strand
Strand 2	Q	107	111	parallel
Strand 3	Q	88	95	anti-parallel
Strand 4	Q	34	39	anti-parallel
Strand 5	Q	45	52	anti-parallel
Strand 6	Q	56	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	12	first strand
Strand 2	Q	107	111	parallel
Strand 3	Q	88	95	anti-parallel
Strand 4	Q	100	103	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	100	100	first strand
Strand 2	A	135	144	anti-parallel
Strand 3	A	156	161	anti-parallel
Strand 4	A	267	270	anti-parallel
Strand 5	A	186	194	anti-parallel
Strand 6	A	246	253	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	135	144	anti-parallel
Strand 3	A	156	161	anti-parallel
Strand 4	A	267	270	anti-parallel
Strand 5	A	186	194	anti-parallel
Strand 6	A	274	276	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	292	293	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	81	84	parallel
Strand 3	A	281	284	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	259	263	anti-parallel
Strand 3	A	212	217	anti-parallel
Strand 4	A	220	225	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	292	293	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	81	84	parallel
Strand 3	B	281	284	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	274	277	anti-parallel
Strand 3	B	186	195	anti-parallel
Strand 4	B	267	270	anti-parallel
Strand 5	B	156	161	anti-parallel
Strand 6	B	135	144	anti-parallel
Strand 7	B	245	253	first strand

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	135	144	anti-parallel
Strand 3	B	156	161	anti-parallel
Strand 4	B	267	270	anti-parallel
Strand 5	B	186	195	anti-parallel
Strand 6	J	100	100	first strand

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	177	first strand
Strand 2	B	259	263	anti-parallel
Strand 3	B	212	217	anti-parallel
Strand 4	B	220	225	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	44	first strand
Strand 2	C	289	293	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	81	84	parallel
Strand 3	C	281	284	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	274	277	anti-parallel
Strand 3	C	186	195	anti-parallel
Strand 4	C	267	270	anti-parallel
Strand 5	C	156	161	anti-parallel
Strand 6	C	135	138	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	274	277	anti-parallel
Strand 3	C	186	195	anti-parallel
Strand 4	C	245	253	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	144	first strand
Strand 2	C	150	151	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	177	first strand
Strand 2	C	259	263	anti-parallel
Strand 3	C	212	217	anti-parallel
Strand 4	C	220	225	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	45	52	anti-parallel
Strand 3	J	34	39	anti-parallel
Strand 4	J	88	95	anti-parallel
Strand 5	J	100	103	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	59	first strand
Strand 2	J	45	52	anti-parallel
Strand 3	J	34	39	anti-parallel
Strand 4	J	88	95	anti-parallel
Strand 5	J	107	109	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	13	first strand
Strand 2	K	25	30	anti-parallel
Strand 3	K	76	81	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	16	17	first strand
Strand 2	K	107	109	parallel
Strand 3	K	91	97	anti-parallel
Strand 4	K	40	44	anti-parallel
Strand 5	K	51	54	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	16	17	first strand
Strand 2	K	107	109	parallel
Strand 3	K	91	97	anti-parallel
Strand 4	K	102	104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NJ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NJ9