Analysis of interatomic Contacts of Structural Units in PDB entry:
9NJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NJA entry

There are 9 chains in PDB entry 9NJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLU 9VAL 111
H
 VAL 2VAL 111
A
 PRO 36PRO 322
K
 GLU 9VAL 111
J
 VAL 2VAL 111
B
 PRO 36PRO 322
P
 GLU 9VAL 111
Q
 VAL 2VAL 111
C
 PRO 36PRO 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9NJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
32 35Right-handed 310
Helix 2
AA2
L
85 89Right-handed 310
Helix 3
AA3
H
28 32Right-handed 310
Helix 4
AA4
H
61 64Right-handed 310
Helix 5
AA5
H
83 87Right-handed 310
Helix 6
AA6
A
61 68Right-handed alpha
Helix 7
AA7
A
98 102Right-handed 310
Helix 8
AA8
A
103 105Right-handed 310
Helix 9
AA9
A
106 112Right-handed alpha
Helix 10
AB1
A
126 130Right-handed 310
Helix 11
AB2
A
197 206Right-handed alpha
Helix 12
AB3
K
32 35Right-handed 310
Helix 13
AB4
K
85 89Right-handed 310
Helix 14
AB5
J
28 32Right-handed 310
Helix 15
AB6
J
61 64Right-handed 310
Helix 16
AB7
J
83 87Right-handed 310
Helix 17
AB8
B
61 68Right-handed alpha
Helix 18
AB9
B
98 102Right-handed 310
Helix 19
AC1
B
103 105Right-handed 310
Helix 20
AC2
B
106 112Right-handed alpha
Helix 21
AC3
B
126 130Right-handed 310
Helix 22
AC4
B
197 206Right-handed alpha
Helix 23
AC5
P
32 35Right-handed 310
Helix 24
AC6
P
85 89Right-handed 310
Helix 25
AC7
Q
28 32Right-handed 310
Helix 26
AC8
Q
61 64Right-handed 310
Helix 27
AC9
Q
83 87Right-handed 310
Helix 28
AD1
C
61 68Right-handed alpha
Helix 29
AD2
C
98 102Right-handed 310
Helix 30
AD3
C
103 105Right-handed 310
Helix 31
AD4
C
106 112Right-handed alpha
Helix 32
AD5
C
126 130Right-handed 310
Helix 33
AD6
C
197 206Right-handed alpha
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There are 36 sheets in PDB entry 9NJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
12 13first strand
Strand 2
L
25 30anti-parallel
Strand 3
L
76 81anti-parallel
Strand 4
L
68 73anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
16 18first strand
Strand 2
L
107 110parallel
Strand 3
L
91 97anti-parallel
Strand 4
L
40 44anti-parallel
Strand 5
L
51 54anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
16 18first strand
Strand 2
L
107 110parallel
Strand 3
L
91 97anti-parallel
Strand 4
L
102 104anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 11first strand
Strand 2
H
107 110parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
56 59anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 11first strand
Strand 2
H
107 110parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
100 103anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
100 100first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
156 161anti-parallel
Strand 4
A
267 270anti-parallel
Strand 5
A
186 195anti-parallel
Strand 6
A
274 277anti-parallel
Strand 7
A
116 119anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
100 100first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
156 161anti-parallel
Strand 4
A
267 270anti-parallel
Strand 5
A
186 195anti-parallel
Strand 6
A
245 253anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
292 293parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
81 84parallel
Strand 3
A
281 284parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 177first strand
Strand 2
A
259 263anti-parallel
Strand 3
A
212 217anti-parallel
Strand 4
A
220 225anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
295 297anti-parallel
Strand 3
A
317 319anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
12 13first strand
Strand 2
K
25 30anti-parallel
Strand 3
K
76 81anti-parallel
Strand 4
K
68 73anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
16 18first strand
Strand 2
K
107 110parallel
Strand 3
K
91 97anti-parallel
Strand 4
K
40 44anti-parallel
Strand 5
K
51 54anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
16 18first strand
Strand 2
K
107 110parallel
Strand 3
K
91 97anti-parallel
Strand 4
K
102 104anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
3 6first strand
Strand 2
J
18 25anti-parallel
Strand 3
J
77 82anti-parallel
Strand 4
J
67 72anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 11first strand
Strand 2
J
107 110parallel
Strand 3
J
88 95anti-parallel
Strand 4
J
34 39anti-parallel
Strand 5
J
45 52anti-parallel
Strand 6
J
56 59anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 11first strand
Strand 2
J
107 110parallel
Strand 3
J
88 95anti-parallel
Strand 4
J
100 103anti-parallel
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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
100 100first strand
Strand 2
B
135 140anti-parallel
Strand 3
B
156 161anti-parallel
Strand 4
B
267 270anti-parallel
Strand 5
B
186 195anti-parallel
Strand 6
B
274 277anti-parallel
Strand 7
B
116 119anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
100 100first strand
Strand 2
B
135 140anti-parallel
Strand 3
B
156 161anti-parallel
Strand 4
B
267 270anti-parallel
Strand 5
B
186 195anti-parallel
Strand 6
B
245 253anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
292 293parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
81 84parallel
Strand 3
B
281 284parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 177first strand
Strand 2
B
259 263anti-parallel
Strand 3
B
212 217anti-parallel
Strand 4
B
220 225anti-parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 303first strand
Strand 2
B
295 297anti-parallel
Strand 3
B
317 319anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
12 13first strand
Strand 2
P
25 30anti-parallel
Strand 3
P
76 81anti-parallel
Strand 4
P
68 73anti-parallel
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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
16 18first strand
Strand 2
P
107 110parallel
Strand 3
P
91 97anti-parallel
Strand 4
P
40 44anti-parallel
Strand 5
P
51 54anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
16 18first strand
Strand 2
P
107 110parallel
Strand 3
P
91 97anti-parallel
Strand 4
P
102 104anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
3 6first strand
Strand 2
Q
18 25anti-parallel
Strand 3
Q
77 82anti-parallel
Strand 4
Q
67 72anti-parallel
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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
10 11first strand
Strand 2
Q
107 110parallel
Strand 3
Q
88 95anti-parallel
Strand 4
Q
34 39anti-parallel
Strand 5
Q
45 52anti-parallel
Strand 6
Q
56 59anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
10 11first strand
Strand 2
Q
107 110parallel
Strand 3
Q
88 95anti-parallel
Strand 4
Q
100 103anti-parallel
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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
100 100first strand
Strand 2
C
135 140anti-parallel
Strand 3
C
156 161anti-parallel
Strand 4
C
267 270anti-parallel
Strand 5
C
186 195anti-parallel
Strand 6
C
274 277anti-parallel
Strand 7
C
116 119anti-parallel
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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
100 100first strand
Strand 2
C
135 140anti-parallel
Strand 3
C
156 161anti-parallel
Strand 4
C
267 270anti-parallel
Strand 5
C
186 195anti-parallel
Strand 6
C
245 253anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 44first strand
Strand 2
C
292 293parallel
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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 50first strand
Strand 2
C
81 84parallel
Strand 3
C
281 284parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 177first strand
Strand 2
C
259 263anti-parallel
Strand 3
C
212 217anti-parallel
Strand 4
C
220 225anti-parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
301 303first strand
Strand 2
C
295 297anti-parallel
Strand 3
C
317 319anti-parallel
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