Analysis of interatomic Contacts of Structural Units in PDB entry:
9NJC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NJC entry

There are 3 chains in PDB entry 9NJC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 46	LYS 669
B	ALA 46	LYS 669
C	ALA 46	CYS 668

There are 59 helices in PDB entry 9NJC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	124	139	Right-handed alpha
Helix 2	AA2	A	140	142	Right-handed 310
Helix 3	AA3	A	164	180	Right-handed alpha
Helix 4	AA4	A	205	210	Right-handed alpha
Helix 5	AA5	A	237	266	Right-handed alpha
Helix 6	AA6	A	280	300	Right-handed alpha
Helix 7	AA7	A	305	328	Right-handed alpha
Helix 8	AA8	A	332	356	Right-handed alpha
Helix 9	AA9	A	402	406	Right-handed 310
Helix 10	AB1	A	430	435	Right-handed 310
Helix 11	AB2	A	444	459	Right-handed alpha
Helix 12	AB3	A	460	462	Right-handed 310
Helix 13	AB4	A	482	499	Right-handed alpha
Helix 14	AB5	A	534	540	Right-handed alpha
Helix 15	AB6	A	567	593	Right-handed alpha
Helix 16	AB7	A	616	622	Right-handed alpha
Helix 17	AB8	A	625	636	Right-handed alpha
Helix 18	AB9	A	653	669	Right-handed alpha
Helix 19	AC1	B	104	111	Right-handed 310
Helix 20	AC2	B	115	120	Right-handed alpha
Helix 21	AC3	B	124	139	Right-handed alpha
Helix 22	AC4	B	140	142	Right-handed 310
Helix 23	AC5	B	164	180	Right-handed alpha
Helix 24	AC6	B	205	210	Right-handed alpha
Helix 25	AC7	B	237	267	Right-handed alpha
Helix 26	AC8	B	280	300	Right-handed alpha
Helix 27	AC9	B	305	328	Right-handed alpha
Helix 28	AD1	B	332	356	Right-handed alpha
Helix 29	AD2	B	430	435	Right-handed 310
Helix 30	AD3	B	444	459	Right-handed alpha
Helix 31	AD4	B	460	462	Right-handed 310
Helix 32	AD5	B	482	498	Right-handed alpha
Helix 33	AD6	B	534	540	Right-handed alpha
Helix 34	AD7	B	567	593	Right-handed alpha
Helix 35	AD8	B	616	622	Right-handed alpha
Helix 36	AD9	B	625	635	Right-handed alpha
Helix 37	AE1	B	653	669	Right-handed alpha
Helix 38	AE2	C	107	111	Right-handed alpha
Helix 39	AE3	C	115	118	Right-handed 310
Helix 40	AE4	C	124	139	Right-handed alpha
Helix 41	AE5	C	140	142	Right-handed 310
Helix 42	AE6	C	164	180	Right-handed alpha
Helix 43	AE7	C	205	211	Right-handed alpha
Helix 44	AE8	C	222	224	Right-handed 310
Helix 45	AE9	C	237	267	Right-handed alpha
Helix 46	AF1	C	280	301	Right-handed alpha
Helix 47	AF2	C	305	328	Right-handed alpha
Helix 48	AF3	C	332	356	Right-handed alpha
Helix 49	AF4	C	401	406	Right-handed 310
Helix 50	AF5	C	409	417	Right-handed alpha
Helix 51	AF6	C	430	435	Right-handed 310
Helix 52	AF7	C	444	459	Right-handed alpha
Helix 53	AF8	C	460	462	Right-handed 310
Helix 54	AF9	C	482	499	Right-handed alpha
Helix 55	AG1	C	534	540	Right-handed alpha
Helix 56	AG2	C	567	593	Right-handed alpha
Helix 57	AG3	C	616	622	Right-handed alpha
Helix 58	AG4	C	625	636	Right-handed alpha
Helix 59	AG5	C	653	668	Right-handed alpha

There are 12 sheets in PDB entry 9NJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	51	first strand
Strand 2	A	54	59	anti-parallel
Strand 3	A	69	75	anti-parallel
Strand 4	A	78	86	anti-parallel
Strand 5	A	150	158	anti-parallel
Strand 6	A	98	103	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	202	first strand
Strand 2	A	189	196	anti-parallel
Strand 3	A	214	221	anti-parallel
Strand 4	A	225	236	anti-parallel
Strand 5	A	554	561	anti-parallel
Strand 6	A	543	549	anti-parallel
Strand 7	A	507	517	anti-parallel
Strand 8	A	524	531	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	374	first strand
Strand 2	A	382	388	anti-parallel
Strand 3	A	391	400	anti-parallel
Strand 4	A	469	478	anti-parallel
Strand 5	A	423	428	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	611	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	638	641	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	54	59	anti-parallel
Strand 3	B	69	75	anti-parallel
Strand 4	B	78	86	anti-parallel
Strand 5	B	150	158	anti-parallel
Strand 6	B	98	103	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	189	196	anti-parallel
Strand 3	B	214	221	anti-parallel
Strand 4	B	225	236	anti-parallel
Strand 5	B	554	561	anti-parallel
Strand 6	B	543	549	anti-parallel
Strand 7	B	507	517	anti-parallel
Strand 8	B	524	531	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	374	first strand
Strand 2	B	382	388	anti-parallel
Strand 3	B	391	400	anti-parallel
Strand 4	B	469	478	anti-parallel
Strand 5	B	423	428	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	611	first strand
Strand 2	B	646	651	anti-parallel
Strand 3	B	638	641	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	54	59	anti-parallel
Strand 3	C	69	75	anti-parallel
Strand 4	C	78	86	anti-parallel
Strand 5	C	150	158	anti-parallel
Strand 6	C	98	103	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	202	first strand
Strand 2	C	189	196	anti-parallel
Strand 3	C	214	221	anti-parallel
Strand 4	C	225	236	anti-parallel
Strand 5	C	554	561	anti-parallel
Strand 6	C	543	549	anti-parallel
Strand 7	C	507	517	anti-parallel
Strand 8	C	524	531	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	371	first strand
Strand 2	C	382	388	anti-parallel
Strand 3	C	391	400	anti-parallel
Strand 4	C	469	478	anti-parallel
Strand 5	C	423	428	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	606	611	first strand
Strand 2	C	646	651	anti-parallel
Strand 3	C	638	641	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NJC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NJC