Analysis of interatomic Contacts of Structural Units in PDB entry:
9NJK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NJK entry

There are 6 chains in PDB entry 9NJK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	PHE 80	GLU 400
C	PHE 80	GLU 400
E	VAL 81	GLU 400
F	PHE 80	GLU 400
B	VAL 81	GLU 400
A	PHE 80	GLU 400

There are 90 helices in PDB entry 9NJK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	82	86	Right-handed 310
Helix 2	AA2	D	92	102	Right-handed alpha
Helix 3	AA3	D	106	113	Right-handed alpha
Helix 4	AA4	D	114	121	Right-handed alpha
Helix 5	AA5	D	125	140	Right-handed alpha
Helix 6	AA6	D	147	157	Right-handed alpha
Helix 7	AA7	D	164	172	Right-handed alpha
Helix 8	AA8	D	190	204	Right-handed alpha
Helix 9	AA9	D	205	209	Right-handed 310
Helix 10	AB1	D	225	237	Right-handed alpha
Helix 11	AB2	D	239	246	Right-handed alpha
Helix 12	AB3	D	254	272	Right-handed alpha
Helix 13	AB4	D	282	290	Right-handed alpha
Helix 14	AB5	D	296	318	Right-handed alpha
Helix 15	AB6	D	347	354	Right-handed alpha
Helix 16	AB7	C	82	86	Right-handed 310
Helix 17	AB8	C	92	103	Right-handed alpha
Helix 18	AB9	C	106	113	Right-handed alpha
Helix 19	AC1	C	114	121	Right-handed alpha
Helix 20	AC2	C	125	140	Right-handed alpha
Helix 21	AC3	C	146	156	Right-handed alpha
Helix 22	AC4	C	164	171	Right-handed alpha
Helix 23	AC5	C	190	202	Right-handed alpha
Helix 24	AC6	C	225	234	Right-handed alpha
Helix 25	AC7	C	254	270	Right-handed alpha
Helix 26	AC8	C	283	289	Right-handed alpha
Helix 27	AC9	C	295	318	Right-handed alpha
Helix 28	AD1	C	347	354	Right-handed alpha
Helix 29	AD2	E	82	87	Right-handed 310
Helix 30	AD3	E	92	102	Right-handed alpha
Helix 31	AD4	E	106	113	Right-handed alpha
Helix 32	AD5	E	114	120	Right-handed alpha
Helix 33	AD6	E	125	140	Right-handed alpha
Helix 34	AD7	E	147	156	Right-handed alpha
Helix 35	AD8	E	164	172	Right-handed alpha
Helix 36	AD9	E	187	190	Right-handed 310
Helix 37	AE1	E	191	202	Right-handed alpha
Helix 38	AE2	E	205	209	Right-handed 310
Helix 39	AE3	E	225	237	Right-handed alpha
Helix 40	AE4	E	239	246	Right-handed alpha
Helix 41	AE5	E	254	272	Right-handed alpha
Helix 42	AE6	E	282	288	Right-handed alpha
Helix 43	AE7	E	297	318	Right-handed alpha
Helix 44	AE8	E	347	354	Right-handed alpha
Helix 45	AE9	F	83	87	Right-handed 310
Helix 46	AF1	F	92	103	Right-handed alpha
Helix 47	AF2	F	106	113	Right-handed alpha
Helix 48	AF3	F	114	121	Right-handed alpha
Helix 49	AF4	F	125	140	Right-handed alpha
Helix 50	AF5	F	147	157	Right-handed alpha
Helix 51	AF6	F	164	171	Right-handed alpha
Helix 52	AF7	F	190	202	Right-handed alpha
Helix 53	AF8	F	205	209	Right-handed 310
Helix 54	AF9	F	225	237	Right-handed alpha
Helix 55	AG1	F	239	246	Right-handed alpha
Helix 56	AG2	F	254	270	Right-handed alpha
Helix 57	AG3	F	282	287	Right-handed alpha
Helix 58	AG4	F	296	318	Right-handed alpha
Helix 59	AG5	F	347	354	Right-handed alpha
Helix 60	AG6	B	82	87	Right-handed 310
Helix 61	AG7	B	92	102	Right-handed alpha
Helix 62	AG8	B	106	113	Right-handed alpha
Helix 63	AG9	B	114	120	Right-handed alpha
Helix 64	AH1	B	125	138	Right-handed alpha
Helix 65	AH2	B	147	156	Right-handed alpha
Helix 66	AH3	B	164	171	Right-handed alpha
Helix 67	AH4	B	190	202	Right-handed alpha
Helix 68	AH5	B	203	204	Right-handed 310
Helix 69	AH6	B	205	209	Right-handed 310
Helix 70	AH7	B	227	236	Right-handed alpha
Helix 71	AH8	B	239	246	Right-handed alpha
Helix 72	AH9	B	254	270	Right-handed alpha
Helix 73	AI1	B	282	290	Right-handed alpha
Helix 74	AI2	B	296	318	Right-handed alpha
Helix 75	AI3	B	348	354	Right-handed alpha
Helix 76	AI4	A	82	87	Right-handed 310
Helix 77	AI5	A	92	102	Right-handed alpha
Helix 78	AI6	A	106	113	Right-handed alpha
Helix 79	AI7	A	114	121	Right-handed alpha
Helix 80	AI8	A	125	138	Right-handed alpha
Helix 81	AI9	A	146	156	Right-handed alpha
Helix 82	AJ1	A	164	172	Right-handed alpha
Helix 83	AJ2	A	190	202	Right-handed alpha
Helix 84	AJ3	A	205	209	Right-handed 310
Helix 85	AJ4	A	226	237	Right-handed alpha
Helix 86	AJ5	A	239	246	Right-handed alpha
Helix 87	AJ6	A	254	272	Right-handed alpha
Helix 88	AJ7	A	283	290	Right-handed alpha
Helix 89	AJ8	A	297	318	Right-handed alpha
Helix 90	AJ9	A	349	354	Right-handed alpha

There are 10 sheets in PDB entry 9NJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	C	247	251	anti-parallel
Strand 3	C	214	219	parallel
Strand 4	C	274	280	parallel
Strand 5	C	320	326	parallel
Strand 6	C	180	185	parallel
Strand 7	C	356	362	parallel
Strand 8	C	367	374	anti-parallel
Strand 9	C	382	388	anti-parallel
Strand 10	C	391	393	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	175	176	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	393	first strand
Strand 2	D	382	388	anti-parallel
Strand 3	D	367	374	anti-parallel
Strand 4	D	357	362	anti-parallel
Strand 5	D	180	185	parallel
Strand 6	D	320	325	parallel
Strand 7	D	276	280	parallel
Strand 8	D	215	219	parallel
Strand 9	D	247	251	parallel
Strand 10	E	145	146	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	160	first strand
Strand 2	E	175	176	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	391	393	first strand
Strand 2	E	382	388	anti-parallel
Strand 3	E	368	374	anti-parallel
Strand 4	E	356	362	anti-parallel
Strand 5	E	180	185	parallel
Strand 6	E	320	326	parallel
Strand 7	E	274	280	parallel
Strand 8	E	214	219	parallel
Strand 9	E	247	251	parallel
Strand 10	F	145	146	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	160	first strand
Strand 2	F	175	176	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	251	first strand
Strand 2	F	214	219	parallel
Strand 3	F	274	280	parallel
Strand 4	F	320	325	parallel
Strand 5	F	180	185	parallel
Strand 6	F	356	362	parallel
Strand 7	F	368	374	anti-parallel
Strand 8	F	382	388	anti-parallel
Strand 9	F	391	393	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	A	248	251	anti-parallel
Strand 3	A	214	219	parallel
Strand 4	A	274	280	parallel
Strand 5	A	320	325	parallel
Strand 6	A	180	185	parallel
Strand 7	A	356	362	parallel
Strand 8	A	367	374	anti-parallel
Strand 9	A	382	388	anti-parallel
Strand 10	A	391	393	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	251	first strand
Strand 2	B	214	219	parallel
Strand 3	B	274	280	parallel
Strand 4	B	320	324	parallel
Strand 5	B	180	185	parallel
Strand 6	B	356	362	parallel
Strand 7	B	367	374	anti-parallel
Strand 8	B	382	388	anti-parallel
Strand 9	B	391	393	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	160	first strand
Strand 2	A	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NJK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NJK