Analysis of interatomic Contacts of Structural Units in PDB entry:
9NJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NJL entry

There are 12 chains in PDB entry 9NJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 1SER 119
L
 ASP 1LYS 107
A
 GLY 39ASN 219
B
 ALA 503ARG 597
I
 GLU 1SER 119
N
 ASP 1LYS 107
C
 GLY 39ASN 219
D
 ALA 503ARG 597
J
 GLU 1SER 119
P
 ASP 1LYS 107
E
 GLY 39ASN 219
F
 ALA 503ARG 597
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9NJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
28 32Right-handed 310
Helix 2
AA2
H
87 91Right-handed 310
Helix 3
AA3
A
55 58Right-handed 310
Helix 4
AA4
A
62 68Right-handed alpha
Helix 5
AA5
A
171 179Right-handed alpha
Helix 6
AA6
B
529 533Right-handed 310
Helix 7
AA7
B
554 577Right-handed alpha
Helix 8
AA8
B
585 597Right-handed alpha
Helix 9
AA9
I
28 32Right-handed 310
Helix 10
AB1
I
87 91Right-handed 310
Helix 11
AB2
C
43 45Right-handed 310
Helix 12
AB3
C
55 58Right-handed 310
Helix 13
AB4
C
62 68Right-handed alpha
Helix 14
AB5
C
171 179Right-handed alpha
Helix 15
AB6
D
529 533Right-handed 310
Helix 16
AB7
D
554 577Right-handed alpha
Helix 17
AB8
D
585 597Right-handed alpha
Helix 18
AB9
J
28 32Right-handed 310
Helix 19
AC1
J
87 91Right-handed 310
Helix 20
AC2
E
55 58Right-handed 310
Helix 21
AC3
E
62 68Right-handed alpha
Helix 22
AC4
E
171 179Right-handed alpha
Helix 23
AC5
F
529 533Right-handed 310
Helix 24
AC6
F
554 577Right-handed alpha
Helix 25
AC7
F
585 597Right-handed alpha
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There are 30 sheets in PDB entry 9NJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
114 118parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
114 118parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
107 109anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 106parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 46first strand
Strand 2
L
33 38anti-parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
48 49first strand
Strand 2
L
53 54anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
149 151anti-parallel
Strand 3
A
143 145anti-parallel
Strand 4
A
159 169anti-parallel
Strand 5
A
89 98anti-parallel
Strand 6
A
119 128parallel
Strand 7
A
194 200parallel
Strand 8
A
215 217anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
149 151anti-parallel
Strand 3
A
143 145anti-parallel
Strand 4
A
159 169anti-parallel
Strand 5
A
47 53anti-parallel
Strand 6
A
85 87parallel
Strand 7
B
516 520anti-parallel
Strand 8
B
545 549anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
135 138anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
3 7first strand
Strand 2
I
18 25anti-parallel
Strand 3
I
78 83anti-parallel
Strand 4
I
68 73anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 12first strand
Strand 2
I
114 118parallel
Strand 3
I
92 99anti-parallel
Strand 4
I
33 39anti-parallel
Strand 5
I
45 51anti-parallel
Strand 6
I
58 60anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 12first strand
Strand 2
I
114 118parallel
Strand 3
I
92 99anti-parallel
Strand 4
I
107 109anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
4 7first strand
Strand 2
N
19 25anti-parallel
Strand 3
N
70 75anti-parallel
Strand 4
N
62 67anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
10 13first strand
Strand 2
N
103 106parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
45 46first strand
Strand 2
N
33 38anti-parallel
Strand 3
N
85 90anti-parallel
Strand 4
N
97 98anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
48 49first strand
Strand 2
N
53 54anti-parallel
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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 82first strand
Strand 2
C
149 151anti-parallel
Strand 3
C
143 145anti-parallel
Strand 4
C
159 169anti-parallel
Strand 5
C
89 98anti-parallel
Strand 6
C
119 128parallel
Strand 7
C
194 200parallel
Strand 8
C
215 217anti-parallel
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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 82first strand
Strand 2
C
149 151anti-parallel
Strand 3
C
143 145anti-parallel
Strand 4
C
159 169anti-parallel
Strand 5
C
47 53anti-parallel
Strand 6
C
85 87parallel
Strand 7
D
516 520anti-parallel
Strand 8
D
545 549anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 73first strand
Strand 2
C
135 138anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
3 7first strand
Strand 2
J
18 25anti-parallel
Strand 3
J
78 83anti-parallel
Strand 4
J
68 73anti-parallel
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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
11 12first strand
Strand 2
J
114 118parallel
Strand 3
J
92 99anti-parallel
Strand 4
J
33 39anti-parallel
Strand 5
J
45 51anti-parallel
Strand 6
J
58 60anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
11 12first strand
Strand 2
J
114 118parallel
Strand 3
J
92 99anti-parallel
Strand 4
J
107 109anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
4 7first strand
Strand 2
P
19 25anti-parallel
Strand 3
P
70 75anti-parallel
Strand 4
P
62 67anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
10 13first strand
Strand 2
P
103 106parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
45 46first strand
Strand 2
P
33 38anti-parallel
Strand 3
P
85 90anti-parallel
Strand 4
P
97 98anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
48 49first strand
Strand 2
P
53 54anti-parallel
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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
80 82first strand
Strand 2
E
149 151anti-parallel
Strand 3
E
143 145anti-parallel
Strand 4
E
159 169anti-parallel
Strand 5
E
89 98anti-parallel
Strand 6
E
119 128parallel
Strand 7
E
194 200parallel
Strand 8
E
215 217anti-parallel
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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
80 82first strand
Strand 2
E
149 151anti-parallel
Strand 3
E
143 145anti-parallel
Strand 4
E
159 169anti-parallel
Strand 5
E
47 53anti-parallel
Strand 6
E
85 87parallel
Strand 7
F
516 520anti-parallel
Strand 8
F
545 549anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
70 73first strand
Strand 2
E
135 138anti-parallel
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