Analysis of interatomic Contacts of Structural Units in PDB entry:
9NJS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NJS entry

There are 4 chains in PDB entry 9NJS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	LEU 217	LYS 695
b	LEU 217	LYS 695
c	LEU 217	LYS 695
d	LEU 217	LYS 695

There are 76 helices in PDB entry 9NJS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	217	242	Right-handed alpha
Helix 2	AA2	a	246	258	Right-handed alpha
Helix 3	AA3	a	269	273	Right-handed 310
Helix 4	AA4	a	275	292	Right-handed alpha
Helix 5	AA5	a	310	312	Right-handed 310
Helix 6	AA6	a	334	338	Right-handed 310
Helix 7	AA7	a	349	353	Right-handed 310
Helix 8	AA8	a	363	367	Right-handed 310
Helix 9	AA9	a	398	412	Right-handed alpha
Helix 10	AB1	a	467	498	Right-handed alpha
Helix 11	AB2	a	499	505	Right-handed alpha
Helix 12	AB3	a	505	528	Right-handed alpha
Helix 13	AB4	a	532	542	Right-handed alpha
Helix 14	AB5	a	548	572	Right-handed alpha
Helix 15	AB6	a	573	577	Right-handed 310
Helix 16	AB7	a	580	619	Right-handed alpha
Helix 17	AB8	a	628	642	Right-handed alpha
Helix 18	AB9	a	645	653	Right-handed alpha
Helix 19	AC1	a	655	694	Right-handed alpha
Helix 20	AC2	b	218	242	Right-handed alpha
Helix 21	AC3	b	246	258	Right-handed alpha
Helix 22	AC4	b	269	273	Right-handed 310
Helix 23	AC5	b	275	292	Right-handed alpha
Helix 24	AC6	b	310	312	Right-handed 310
Helix 25	AC7	b	334	338	Right-handed 310
Helix 26	AC8	b	349	353	Right-handed 310
Helix 27	AC9	b	363	367	Right-handed 310
Helix 28	AD1	b	398	412	Right-handed alpha
Helix 29	AD2	b	467	498	Right-handed alpha
Helix 30	AD3	b	499	505	Right-handed alpha
Helix 31	AD4	b	505	528	Right-handed alpha
Helix 32	AD5	b	532	542	Right-handed alpha
Helix 33	AD6	b	548	572	Right-handed alpha
Helix 34	AD7	b	573	577	Right-handed 310
Helix 35	AD8	b	580	619	Right-handed alpha
Helix 36	AD9	b	628	642	Right-handed alpha
Helix 37	AE1	b	645	653	Right-handed alpha
Helix 38	AE2	b	655	694	Right-handed alpha
Helix 39	AE3	c	218	242	Right-handed alpha
Helix 40	AE4	c	246	258	Right-handed alpha
Helix 41	AE5	c	269	273	Right-handed 310
Helix 42	AE6	c	275	292	Right-handed alpha
Helix 43	AE7	c	310	312	Right-handed 310
Helix 44	AE8	c	334	338	Right-handed 310
Helix 45	AE9	c	349	353	Right-handed 310
Helix 46	AF1	c	363	367	Right-handed 310
Helix 47	AF2	c	398	412	Right-handed alpha
Helix 48	AF3	c	467	498	Right-handed alpha
Helix 49	AF4	c	499	505	Right-handed alpha
Helix 50	AF5	c	505	528	Right-handed alpha
Helix 51	AF6	c	532	542	Right-handed alpha
Helix 52	AF7	c	548	572	Right-handed alpha
Helix 53	AF8	c	573	577	Right-handed 310
Helix 54	AF9	c	580	619	Right-handed alpha
Helix 55	AG1	c	628	642	Right-handed alpha
Helix 56	AG2	c	645	653	Right-handed alpha
Helix 57	AG3	c	655	694	Right-handed alpha
Helix 58	AG4	d	218	242	Right-handed alpha
Helix 59	AG5	d	246	258	Right-handed alpha
Helix 60	AG6	d	269	273	Right-handed 310
Helix 61	AG7	d	275	292	Right-handed alpha
Helix 62	AG8	d	310	312	Right-handed 310
Helix 63	AG9	d	334	338	Right-handed 310
Helix 64	AH1	d	349	353	Right-handed 310
Helix 65	AH2	d	363	367	Right-handed 310
Helix 66	AH3	d	398	412	Right-handed alpha
Helix 67	AH4	d	467	498	Right-handed alpha
Helix 68	AH5	d	499	505	Right-handed alpha
Helix 69	AH6	d	506	528	Right-handed alpha
Helix 70	AH7	d	532	542	Right-handed alpha
Helix 71	AH8	d	548	572	Right-handed alpha
Helix 72	AH9	d	573	577	Right-handed 310
Helix 73	AI1	d	580	619	Right-handed alpha
Helix 74	AI2	d	628	642	Right-handed alpha
Helix 75	AI3	d	645	653	Right-handed alpha
Helix 76	AI4	d	655	694	Right-handed alpha

There are 12 sheets in PDB entry 9NJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	308	309	first strand
Strand 2	a	313	315	anti-parallel
Strand 3	a	421	430	anti-parallel
Strand 4	a	435	444	anti-parallel
Strand 5	a	452	454	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	391	394	first strand
Strand 2	a	320	324	anti-parallel
Strand 3	a	421	430	anti-parallel
Strand 4	a	435	444	anti-parallel
Strand 5	a	457	460	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	379	380	first strand
Strand 2	a	385	386	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	308	309	first strand
Strand 2	b	313	325	anti-parallel
Strand 3	b	419	430	anti-parallel
Strand 4	b	435	444	anti-parallel
Strand 5	b	452	454	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	391	394	first strand
Strand 2	b	313	325	anti-parallel
Strand 3	b	419	430	anti-parallel
Strand 4	b	435	444	anti-parallel
Strand 5	b	457	460	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	379	380	first strand
Strand 2	b	385	386	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	308	309	first strand
Strand 2	c	313	315	anti-parallel
Strand 3	c	421	430	anti-parallel
Strand 4	c	435	444	anti-parallel
Strand 5	c	452	454	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	391	394	first strand
Strand 2	c	320	324	anti-parallel
Strand 3	c	421	430	anti-parallel
Strand 4	c	435	444	anti-parallel
Strand 5	c	457	460	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	379	380	first strand
Strand 2	c	385	386	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	308	309	first strand
Strand 2	d	313	315	anti-parallel
Strand 3	d	419	430	anti-parallel
Strand 4	d	435	444	anti-parallel
Strand 5	d	452	454	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	391	394	first strand
Strand 2	d	320	325	anti-parallel
Strand 3	d	419	430	anti-parallel
Strand 4	d	435	444	anti-parallel
Strand 5	d	457	460	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	379	380	first strand
Strand 2	d	385	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NJS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NJS