Analysis of interatomic Contacts of Structural Units in PDB entry:
9NK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NK8 entry

There are 5 chains in PDB entry 9NK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 16ARG 333
B
 LEU 36LEU 512
C
 SER -33VAL 424
D
 TRP 1ASN 2
D
 SER 4PHE 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 9NK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 25Right-handed alpha
Helix 2
AA2
A
38 46Right-handed alpha
Helix 3
AA3
A
57 64Right-handed alpha
Helix 4
AA4
A
69 82Right-handed alpha
Helix 5
AA5
A
92 96Right-handed 310
Helix 6
AA6
A
122 130Right-handed alpha
Helix 7
AA7
A
142 146Right-handed 310
Helix 8
AA8
A
150 162Right-handed alpha
Helix 9
AA9
A
162 174Right-handed alpha
Helix 10
AB1
A
175 177Right-handed 310
Helix 11
AB2
A
178 187Right-handed alpha
Helix 12
AB3
A
193 214Right-handed alpha
Helix 13
AB4
A
230 234Right-handed 310
Helix 14
AB5
A
235 257Right-handed alpha
Helix 15
AB6
A
261 265Right-handed 310
Helix 16
AB7
A
269 286Right-handed alpha
Helix 17
AB8
A
300 308Right-handed alpha
Helix 18
AB9
A
311 325Right-handed alpha
Helix 19
AC1
B
37 42Right-handed alpha
Helix 20
AC2
B
58 72Right-handed alpha
Helix 21
AC3
B
78 96Right-handed alpha
Helix 22
AC4
B
163 165Right-handed 310
Helix 23
AC5
B
211 214Right-handed 310
Helix 24
AC6
B
255 261Right-handed alpha
Helix 25
AC7
B
446 462Right-handed alpha
Helix 26
AC8
C
18 32Right-handed alpha
Helix 27
AC9
C
43 47Right-handed 310
Helix 28
AD1
C
66 75Right-handed alpha
Helix 29
AD2
C
105 122Right-handed alpha
Helix 30
AD3
C
122 132Right-handed alpha
Helix 31
AD4
C
134 141Right-handed alpha
Helix 32
AD5
C
142 148Right-handed alpha
Helix 33
AD6
C
153 156Right-handed 310
Helix 34
AD7
C
157 170Right-handed alpha
Helix 35
AD8
C
171 174Right-handed 310
Helix 36
AD9
C
176 181Right-handed 310
Helix 37
AE1
C
234 254Right-handed alpha
Helix 38
AE2
C
268 284Right-handed alpha
Helix 39
AE3
C
290 300Right-handed alpha
Helix 40
AE4
C
300 315Right-handed alpha
Helix 41
AE5
C
316 320Right-handed 310
Helix 42
AE6
C
324 327Right-handed 310
Helix 43
AE7
C
328 333Right-handed alpha
Helix 44
AE8
C
334 337Right-handed 310
Helix 45
AE9
C
338 352Right-handed alpha
Helix 46
AF1
C
356 377Right-handed alpha
Helix 47
AF2
C
402 406Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 9NK8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
B
482 494parallel
Strand 3
B
503 508anti-parallel
Back to list of sheets
Back to top of page

There are 17 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
B
482 494parallel
Strand 3
B
467 476anti-parallel
Strand 4
B
416 428anti-parallel
Strand 5
B
395 405anti-parallel
Strand 6
B
334 346anti-parallel
Strand 7
B
309 321anti-parallel
Strand 8
B
288 298anti-parallel
Strand 9
B
263 277anti-parallel
Strand 10
B
235 248anti-parallel
Strand 11
B
215 229anti-parallel
Strand 12
B
194 210anti-parallel
Strand 13
B
182 191anti-parallel
Strand 14
B
167 175anti-parallel
Strand 15
B
153 162anti-parallel
Strand 16
B
138 144anti-parallel
Strand 17
D
2 6anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
51 54parallel
Strand 3
A
103 105anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
125 131anti-parallel
Strand 3
B
110 111anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
125 131anti-parallel
Strand 3
B
45 52parallel
Strand 4
C
417 421anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 386first strand
Strand 2
B
389 390anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 41first strand
Strand 2
C
3 7parallel
Strand 3
C
54 57anti-parallel
Strand 4
C
63 65anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il