Analysis of interatomic Contacts of Structural Units in PDB entry:
9NKS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NKS entry

There are 16 chains in PDB entry 9NKS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4LEU 34
A
 ASP 36PRO 57
B
 ASN 3ASN 3
B
 PHE 5LEU 34
B
 ASP 36PRO 57
C
 LYS 4LEU 34
C
 ASP 36PRO 57
D
 VAL 1ASN 3
D
 PHE 5LEU 34
D
 ASP 36PRO 57
E
 ASP 2ASN 3
E
 PHE 5LEU 34
E
 ASP 36LYS 58
F
 ASN 3ASN 3
F
 PHE 5LEU 34
F
 ASP 36PRO 57
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9NKS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 18Right-handed alpha
Helix 2
AA2
A
23 37Right-handed alpha
Helix 3
AA3
A
40 55Right-handed alpha
Helix 4
AA4
B
6 18Right-handed alpha
Helix 5
AA5
B
23 37Right-handed alpha
Helix 6
AA6
B
40 55Right-handed alpha
Helix 7
AA7
C
7 19Right-handed alpha
Helix 8
AA8
C
23 37Right-handed alpha
Helix 9
AA9
C
40 55Right-handed alpha
Helix 10
AB1
D
3 5Right-handed 310
Helix 11
AB2
D
6 19Right-handed alpha
Helix 12
AB3
D
23 37Right-handed alpha
Helix 13
AB4
D
40 55Right-handed alpha
Helix 14
AB5
E
6 19Right-handed alpha
Helix 15
AB6
E
23 37Right-handed alpha
Helix 16
AB7
E
40 55Right-handed alpha
Helix 17
AB8
F
6 18Right-handed alpha
Helix 18
AB9
F
23 37Right-handed alpha
Helix 19
AC1
F
40 55Right-handed alpha
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There are no sheets in PDB entry 9NKS
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