Analysis of interatomic Contacts of Structural Units in PDB entry:
9NL2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NL2 entry

There are 4 chains in PDB entry 9NL2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1PRO 1121
B
 C 24 G 62
P
 G 12 T 24
R
 G 228 A 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9NL2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 35Right-handed alpha
Helix 2
AA2
A
53 64Right-handed alpha
Helix 3
AA3
A
87 99Right-handed alpha
Helix 4
AA4
A
99 112Right-handed alpha
Helix 5
AA5
A
127 141Right-handed alpha
Helix 6
AA6
A
149 155Right-handed alpha
Helix 7
AA7
A
159 170Right-handed alpha
Helix 8
AA8
A
203 220Right-handed alpha
Helix 9
AA9
A
226 235Right-handed alpha
Helix 10
AB1
A
239 256Right-handed alpha
Helix 11
AB2
A
284 301Right-handed alpha
Helix 12
AB3
A
303 313Right-handed alpha
Helix 13
AB4
A
322 335Right-handed alpha
Helix 14
AB5
A
353 358Right-handed 310
Helix 15
AB6
A
362 372Right-handed alpha
Helix 16
AB7
A
385 393Right-handed alpha
Helix 17
AB8
A
396 410Right-handed alpha
Helix 18
AB9
A
413 417Right-handed 310
Helix 19
AC1
A
429 435Right-handed alpha
Helix 20
AC2
A
446 464Right-handed alpha
Helix 21
AC3
A
477 497Right-handed alpha
Helix 22
AC4
A
515 524Right-handed alpha
Helix 23
AC5
A
529 540Right-handed alpha
Helix 24
AC6
A
568 588Right-handed alpha
Helix 25
AC7
A
614 633Right-handed alpha
Helix 26
AC8
A
662 666Right-handed 310
Helix 27
AC9
A
694 708Right-handed alpha
Helix 28
AD1
A
712 724Right-handed alpha
Helix 29
AD2
A
724 735Right-handed alpha
Helix 30
AD3
A
738 758Right-handed alpha
Helix 31
AD4
A
764 770Right-handed alpha
Helix 32
AD5
A
771 775Right-handed 310
Helix 33
AD6
A
781 799Right-handed alpha
Helix 34
AD7
A
802 812Right-handed alpha
Helix 35
AD8
A
813 825Right-handed alpha
Helix 36
AD9
A
846 853Right-handed alpha
Helix 37
AE1
A
870 882Right-handed alpha
Helix 38
AE2
A
899 904Right-handed alpha
Helix 39
AE3
A
909 922Right-handed alpha
Helix 40
AE4
A
926 931Right-handed alpha
Helix 41
AE5
A
950 957Right-handed alpha
Helix 42
AE6
A
958 960Right-handed 310
Helix 43
AE7
A
961 983Right-handed alpha
Helix 44
AE8
A
1026 1038Right-handed alpha
Helix 45
AE9
A
1040 1042Right-handed 310
Helix 46
AF1
A
1043 1052Right-handed alpha
Helix 47
AF2
A
1070 1081Right-handed alpha
Helix 48
AF3
A
1083 1120Right-handed alpha
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There are 10 sheets in PDB entry 9NL2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
40 44parallel
Strand 3
A
50 51anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
84 85anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 425first strand
Strand 2
A
439 445anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 604first strand
Strand 2
A
607 612anti-parallel
Strand 3
A
501 505anti-parallel
Strand 4
A
642 645anti-parallel
Strand 5
A
669 670parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 508first strand
Strand 2
A
635 636anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
548 549first strand
Strand 2
A
552 553anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 685first strand
Strand 2
A
689 690anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
841 842first strand
Strand 2
A
862 863anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
986 989first strand
Strand 2
A
1005 1008anti-parallel
Strand 3
A
1013 1016anti-parallel
Strand 4
A
1056 1057parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1018 1021first strand
Strand 2
A
1061 1064parallel
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