Analysis of interatomic Contacts of Structural Units in PDB entry:
9NL3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NL3 entry

There are 4 chains in PDB entry 9NL3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 1169
B
 C 24 G 62
P
 G 12 T 24
R
 G 34 A 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9NL3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 31Right-handed alpha
Helix 2
AA2
A
50 58Right-handed alpha
Helix 3
AA3
A
59 61Right-handed 310
Helix 4
AA4
A
85 97Right-handed alpha
Helix 5
AA5
A
97 110Right-handed alpha
Helix 6
AA6
A
125 137Right-handed alpha
Helix 7
AA7
A
148 153Right-handed alpha
Helix 8
AA8
A
157 171Right-handed alpha
Helix 9
AA9
A
252 267Right-handed alpha
Helix 10
AB1
A
277 282Right-handed alpha
Helix 11
AB2
A
285 304Right-handed alpha
Helix 12
AB3
A
304 312Right-handed alpha
Helix 13
AB4
A
330 352Right-handed alpha
Helix 14
AB5
A
352 361Right-handed alpha
Helix 15
AB6
A
372 385Right-handed alpha
Helix 16
AB7
A
404 409Right-handed alpha
Helix 17
AB8
A
412 423Right-handed alpha
Helix 18
AB9
A
435 443Right-handed alpha
Helix 19
AC1
A
447 460Right-handed alpha
Helix 20
AC2
A
479 484Right-handed alpha
Helix 21
AC3
A
485 487Right-handed 310
Helix 22
AC4
A
496 514Right-handed alpha
Helix 23
AC5
A
527 547Right-handed alpha
Helix 24
AC6
A
559 564Right-handed alpha
Helix 25
AC7
A
565 576Right-handed alpha
Helix 26
AC8
A
579 590Right-handed alpha
Helix 27
AC9
A
619 640Right-handed alpha
Helix 28
AD1
A
667 684Right-handed alpha
Helix 29
AD2
A
745 759Right-handed alpha
Helix 30
AD3
A
763 775Right-handed alpha
Helix 31
AD4
A
775 786Right-handed alpha
Helix 32
AD5
A
789 808Right-handed alpha
Helix 33
AD6
A
815 821Right-handed alpha
Helix 34
AD7
A
822 826Right-handed 310
Helix 35
AD8
A
832 850Right-handed alpha
Helix 36
AD9
A
855 859Right-handed 310
Helix 37
AE1
A
861 876Right-handed alpha
Helix 38
AE2
A
919 931Right-handed alpha
Helix 39
AE3
A
937 942Right-handed 310
Helix 40
AE4
A
948 953Right-handed alpha
Helix 41
AE5
A
958 970Right-handed alpha
Helix 42
AE6
A
975 980Right-handed alpha
Helix 43
AE7
A
983 987Right-handed 310
Helix 44
AE8
A
1000 1007Right-handed alpha
Helix 45
AE9
A
1008 1010Right-handed 310
Helix 46
AF1
A
1011 1033Right-handed alpha
Helix 47
AF2
A
1077 1091Right-handed alpha
Helix 48
AF3
A
1094 1102Right-handed alpha
Helix 49
AF4
A
1122 1130Right-handed alpha
Helix 50
AF5
A
1135 1168Right-handed alpha
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There are 9 sheets in PDB entry 9NL3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
47 48anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
82 83anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 495first strand
Strand 2
A
469 475anti-parallel
Strand 3
A
594 598parallel
Strand 4
A
608 609anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 655first strand
Strand 2
A
658 663anti-parallel
Strand 3
A
550 556anti-parallel
Strand 4
A
693 699anti-parallel
Strand 5
A
704 706anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 655first strand
Strand 2
A
658 663anti-parallel
Strand 3
A
550 556anti-parallel
Strand 4
A
693 699anti-parallel
Strand 5
A
720 721parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 644first strand
Strand 2
A
649 650anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
713 714first strand
Strand 2
A
717 718anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
728 730first strand
Strand 2
A
733 736anti-parallel
Strand 3
A
740 741anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1036 1037first strand
Strand 2
A
1055 1058anti-parallel
Strand 3
A
1063 1071anti-parallel
Strand 4
A
1106 1114parallel
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