Analysis of interatomic Contacts of Structural Units in PDB entry:
9NLD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NLD entry

There are 4 chains in PDB entry 9NLD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 300
B
 MET 1TYR 300
C
 MET 1TYR 296
D
 MET 1TYR 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 9NLD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed 310
Helix 2
AA2
A
36 38Right-handed 310
Helix 3
AA3
A
43 58Right-handed alpha
Helix 4
AA4
A
73 87Right-handed alpha
Helix 5
AA5
A
99 109Right-handed alpha
Helix 6
AA6
A
120 136Right-handed alpha
Helix 7
AA7
A
151 158Right-handed alpha
Helix 8
AA8
A
158 167Right-handed alpha
Helix 9
AA9
A
182 195Right-handed alpha
Helix 10
AB1
A
231 235Right-handed 310
Helix 11
AB2
A
245 261Right-handed alpha
Helix 12
AB3
A
265 280Right-handed alpha
Helix 13
AB4
A
281 285Right-handed 310
Helix 14
AB5
B
6 11Right-handed 310
Helix 15
AB6
B
36 38Right-handed 310
Helix 16
AB7
B
43 58Right-handed alpha
Helix 17
AB8
B
73 87Right-handed alpha
Helix 18
AB9
B
99 109Right-handed alpha
Helix 19
AC1
B
120 136Right-handed alpha
Helix 20
AC2
B
151 158Right-handed alpha
Helix 21
AC3
B
158 167Right-handed alpha
Helix 22
AC4
B
182 195Right-handed alpha
Helix 23
AC5
B
231 235Right-handed 310
Helix 24
AC6
B
245 261Right-handed alpha
Helix 25
AC7
B
265 281Right-handed alpha
Helix 26
AC8
B
282 285Right-handed 310
Helix 27
AC9
C
6 11Right-handed 310
Helix 28
AD1
C
36 38Right-handed 310
Helix 29
AD2
C
43 58Right-handed alpha
Helix 30
AD3
C
73 87Right-handed alpha
Helix 31
AD4
C
99 109Right-handed alpha
Helix 32
AD5
C
120 136Right-handed alpha
Helix 33
AD6
C
151 158Right-handed alpha
Helix 34
AD7
C
158 167Right-handed alpha
Helix 35
AD8
C
181 195Right-handed alpha
Helix 36
AD9
C
245 260Right-handed alpha
Helix 37
AE1
C
265 281Right-handed alpha
Helix 38
AE2
D
6 11Right-handed 310
Helix 39
AE3
D
36 38Right-handed 310
Helix 40
AE4
D
43 58Right-handed alpha
Helix 41
AE5
D
73 87Right-handed alpha
Helix 42
AE6
D
99 109Right-handed alpha
Helix 43
AE7
D
120 135Right-handed alpha
Helix 44
AE8
D
151 158Right-handed alpha
Helix 45
AE9
D
158 167Right-handed alpha
Helix 46
AF1
D
181 192Right-handed alpha
Helix 47
AF2
D
246 261Right-handed alpha
Helix 48
AF3
D
265 281Right-handed alpha
Helix 49
AF4
D
282 285Right-handed 310
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There are 8 sheets in PDB entry 9NLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
D
16 18parallel
Strand 3
D
29 34anti-parallel
Strand 4
D
288 293parallel
Strand 5
D
173 177parallel
Strand 6
D
199 207parallel
Strand 7
D
240 245parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
199 203parallel
Strand 3
A
173 177parallel
Strand 4
A
288 293parallel
Strand 5
A
29 34parallel
Strand 6
A
16 18anti-parallel
Strand 7
D
3 4parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
89 95parallel
Strand 3
A
66 70parallel
Strand 4
A
140 141parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
29 34anti-parallel
Strand 3
B
288 293parallel
Strand 4
B
173 177parallel
Strand 5
B
199 205parallel
Strand 6
B
240 244parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 116first strand
Strand 2
B
89 95parallel
Strand 3
B
66 70parallel
Strand 4
B
140 141parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 18first strand
Strand 2
C
29 34anti-parallel
Strand 3
C
287 292parallel
Strand 4
C
171 177parallel
Strand 5
C
199 205parallel
Strand 6
C
241 244parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 116first strand
Strand 2
C
89 95parallel
Strand 3
C
66 70parallel
Strand 4
C
140 141parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 116first strand
Strand 2
D
89 95parallel
Strand 3
D
66 70parallel
Strand 4
D
140 141parallel
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