Analysis of interatomic Contacts of Structural Units in PDB entry:
9NLX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NLX entry

There are 6 chains in PDB entry 9NLX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 A 1 A 147
A
 MET 1MET 489
B
 MET 1MET 489
C
 MET 1MET 489
H
 A 1 A 147
I
 A 1 A 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 9NLX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 41Right-handed alpha
Helix 2
AA2
A
42 44Right-handed 310
Helix 3
AA3
A
53 58Right-handed alpha
Helix 4
AA4
A
62 69Right-handed alpha
Helix 5
AA5
A
71 83Right-handed alpha
Helix 6
AA6
A
110 129Right-handed alpha
Helix 7
AA7
A
144 159Right-handed alpha
Helix 8
AA8
A
177 187Right-handed alpha
Helix 9
AA9
A
193 205Right-handed alpha
Helix 10
AB1
A
215 226Right-handed alpha
Helix 11
AB2
A
226 237Right-handed alpha
Helix 12
AB3
A
253 272Right-handed alpha
Helix 13
AB4
A
316 336Right-handed alpha
Helix 14
AB5
A
337 341Right-handed 310
Helix 15
AB6
A
355 370Right-handed alpha
Helix 16
AB7
A
374 384Right-handed alpha
Helix 17
AB8
A
393 398Right-handed 310
Helix 18
AB9
A
404 433Right-handed alpha
Helix 19
AC1
A
448 456Right-handed alpha
Helix 20
AC2
A
468 482Right-handed alpha
Helix 21
AC3
A
484 489Right-handed alpha
Helix 22
AC4
B
2 41Right-handed alpha
Helix 23
AC5
B
42 44Right-handed 310
Helix 24
AC6
B
53 58Right-handed alpha
Helix 25
AC7
B
62 69Right-handed alpha
Helix 26
AC8
B
71 83Right-handed alpha
Helix 27
AC9
B
110 129Right-handed alpha
Helix 28
AD1
B
144 159Right-handed alpha
Helix 29
AD2
B
177 187Right-handed alpha
Helix 30
AD3
B
193 205Right-handed alpha
Helix 31
AD4
B
215 226Right-handed alpha
Helix 32
AD5
B
226 237Right-handed alpha
Helix 33
AD6
B
253 272Right-handed alpha
Helix 34
AD7
B
316 336Right-handed alpha
Helix 35
AD8
B
337 341Right-handed 310
Helix 36
AD9
B
355 370Right-handed alpha
Helix 37
AE1
B
374 384Right-handed alpha
Helix 38
AE2
B
393 398Right-handed 310
Helix 39
AE3
B
404 433Right-handed alpha
Helix 40
AE4
B
448 456Right-handed alpha
Helix 41
AE5
B
468 482Right-handed alpha
Helix 42
AE6
B
484 489Right-handed alpha
Helix 43
AE7
C
2 41Right-handed alpha
Helix 44
AE8
C
42 44Right-handed 310
Helix 45
AE9
C
53 58Right-handed alpha
Helix 46
AF1
C
62 69Right-handed alpha
Helix 47
AF2
C
71 83Right-handed alpha
Helix 48
AF3
C
110 129Right-handed alpha
Helix 49
AF4
C
144 159Right-handed alpha
Helix 50
AF5
C
177 187Right-handed alpha
Helix 51
AF6
C
193 205Right-handed alpha
Helix 52
AF7
C
215 226Right-handed alpha
Helix 53
AF8
C
226 237Right-handed alpha
Helix 54
AF9
C
253 272Right-handed alpha
Helix 55
AG1
C
316 336Right-handed alpha
Helix 56
AG2
C
337 341Right-handed 310
Helix 57
AG3
C
355 370Right-handed alpha
Helix 58
AG4
C
374 384Right-handed alpha
Helix 59
AG5
C
393 398Right-handed 310
Helix 60
AG6
C
404 433Right-handed alpha
Helix 61
AG7
C
448 456Right-handed alpha
Helix 62
AG8
C
468 482Right-handed alpha
Helix 63
AG9
C
484 489Right-handed alpha
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There are 12 sheets in PDB entry 9NLX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
106 108anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 243first strand
Strand 2
A
246 251anti-parallel
Strand 3
A
162 170anti-parallel
Strand 4
A
274 275anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 243first strand
Strand 2
A
246 251anti-parallel
Strand 3
A
162 170anti-parallel
Strand 4
A
284 286anti-parallel
Strand 5
A
297 298parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
306 308anti-parallel
Strand 3
A
313 315anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
106 108anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 243first strand
Strand 2
B
246 251anti-parallel
Strand 3
B
162 170anti-parallel
Strand 4
B
274 275anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 243first strand
Strand 2
B
246 251anti-parallel
Strand 3
B
162 170anti-parallel
Strand 4
B
284 286anti-parallel
Strand 5
B
297 298parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 303first strand
Strand 2
B
306 308anti-parallel
Strand 3
B
313 315anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
106 108anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
239 243first strand
Strand 2
C
246 251anti-parallel
Strand 3
C
162 170anti-parallel
Strand 4
C
274 275anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
239 243first strand
Strand 2
C
246 251anti-parallel
Strand 3
C
162 170anti-parallel
Strand 4
C
284 286anti-parallel
Strand 5
C
297 298parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
301 303first strand
Strand 2
C
306 308anti-parallel
Strand 3
C
313 315anti-parallel
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