Analysis of interatomic Contacts of Structural Units in PDB entry:
9NLY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NLY entry

There are 12 chains in PDB entry 9NLY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 228	ALA 758
B	ASP 18	ALA 758
C	ASP 18	ALA 758
D	ASP 18	ALA 758
E	ALA 228	ALA 758
F	ASP 245	ALA 758
G	MET 1	LEU 292
H	MET 1	LEU 292
I	MET 1	LEU 292
J	SER 27	TRP 86
K	ASP 166	ARG 257
L	ILE 433	ILE 650

There are224 helices in PDB entry 9NLY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	245	256	Right-handed alpha
Helix 2	AA2	A	262	270	Right-handed alpha
Helix 3	AA3	A	286	298	Right-handed alpha
Helix 4	AA4	A	309	311	Right-handed 310
Helix 5	AA5	A	320	325	Right-handed alpha
Helix 6	AA6	A	327	337	Right-handed alpha
Helix 7	AA7	A	367	380	Right-handed alpha
Helix 8	AA8	A	420	432	Right-handed alpha
Helix 9	AA9	A	433	438	Right-handed alpha
Helix 10	AB1	A	446	454	Right-handed alpha
Helix 11	AB2	A	460	478	Right-handed alpha
Helix 12	AB3	A	498	509	Right-handed alpha
Helix 13	AB4	A	516	523	Right-handed alpha
Helix 14	AB5	A	533	551	Right-handed alpha
Helix 15	AB6	A	570	580	Right-handed alpha
Helix 16	AB7	A	590	595	Right-handed alpha
Helix 17	AB8	A	598	612	Right-handed alpha
Helix 18	AB9	A	640	651	Right-handed alpha
Helix 19	AC1	A	669	677	Right-handed alpha
Helix 20	AC2	A	694	705	Right-handed alpha
Helix 21	AC3	A	708	723	Right-handed alpha
Helix 22	AC4	A	729	743	Right-handed alpha
Helix 23	AC5	A	745	758	Right-handed alpha
Helix 24	AC6	B	36	42	Right-handed alpha
Helix 25	AC7	B	82	90	Right-handed alpha
Helix 26	AC8	B	103	109	Right-handed alpha
Helix 27	AC9	B	125	129	Right-handed 310
Helix 28	AD1	B	135	148	Right-handed alpha
Helix 29	AD2	B	235	239	Right-handed 310
Helix 30	AD3	B	245	255	Right-handed alpha
Helix 31	AD4	B	262	270	Right-handed alpha
Helix 32	AD5	B	286	295	Right-handed alpha
Helix 33	AD6	B	320	325	Right-handed alpha
Helix 34	AD7	B	327	337	Right-handed alpha
Helix 35	AD8	B	350	354	Right-handed 310
Helix 36	AD9	B	367	380	Right-handed alpha
Helix 37	AE1	B	396	400	Right-handed 310
Helix 38	AE2	B	402	406	Right-handed 310
Helix 39	AE3	B	420	432	Right-handed alpha
Helix 40	AE4	B	433	438	Right-handed alpha
Helix 41	AE5	B	446	454	Right-handed alpha
Helix 42	AE6	B	458	478	Right-handed alpha
Helix 43	AE7	B	490	495	Right-handed 310
Helix 44	AE8	B	498	506	Right-handed alpha
Helix 45	AE9	B	516	523	Right-handed alpha
Helix 46	AF1	B	532	551	Right-handed alpha
Helix 47	AF2	B	569	580	Right-handed alpha
Helix 48	AF3	B	598	613	Right-handed alpha
Helix 49	AF4	B	640	651	Right-handed alpha
Helix 50	AF5	B	669	677	Right-handed alpha
Helix 51	AF6	B	678	682	Right-handed 310
Helix 52	AF7	B	693	705	Right-handed alpha
Helix 53	AF8	B	709	723	Right-handed alpha
Helix 54	AF9	B	729	743	Right-handed alpha
Helix 55	AG1	B	746	758	Right-handed alpha
Helix 56	AG2	C	36	43	Right-handed alpha
Helix 57	AG3	C	82	90	Right-handed alpha
Helix 58	AG4	C	103	109	Right-handed alpha
Helix 59	AG5	C	125	129	Right-handed 310
Helix 60	AG6	C	135	147	Right-handed alpha
Helix 61	AG7	C	245	255	Right-handed alpha
Helix 62	AG8	C	262	269	Right-handed alpha
Helix 63	AG9	C	286	296	Right-handed alpha
Helix 64	AH1	C	318	325	Right-handed alpha
Helix 65	AH2	C	327	337	Right-handed alpha
Helix 66	AH3	C	350	354	Right-handed 310
Helix 67	AH4	C	369	380	Right-handed alpha
Helix 68	AH5	C	420	432	Right-handed alpha
Helix 69	AH6	C	433	438	Right-handed alpha
Helix 70	AH7	C	446	454	Right-handed alpha
Helix 71	AH8	C	458	476	Right-handed alpha
Helix 72	AH9	C	498	506	Right-handed alpha
Helix 73	AI1	C	514	523	Right-handed alpha
Helix 74	AI2	C	533	552	Right-handed alpha
Helix 75	AI3	C	569	582	Right-handed alpha
Helix 76	AI4	C	590	595	Right-handed 310
Helix 77	AI5	C	598	613	Right-handed alpha
Helix 78	AI6	C	625	630	Right-handed alpha
Helix 79	AI7	C	640	651	Right-handed alpha
Helix 80	AI8	C	669	677	Right-handed alpha
Helix 81	AI9	C	694	705	Right-handed alpha
Helix 82	AJ1	C	708	722	Right-handed alpha
Helix 83	AJ2	C	729	741	Right-handed alpha
Helix 84	AJ3	C	747	758	Right-handed alpha
Helix 85	AJ4	D	36	43	Right-handed alpha
Helix 86	AJ5	D	82	90	Right-handed alpha
Helix 87	AJ6	D	103	109	Right-handed alpha
Helix 88	AJ7	D	135	147	Right-handed alpha
Helix 89	AJ8	D	235	239	Right-handed 310
Helix 90	AJ9	D	246	256	Right-handed alpha
Helix 91	AK1	D	262	270	Right-handed alpha
Helix 92	AK2	D	288	297	Right-handed alpha
Helix 93	AK3	D	318	323	Right-handed alpha
Helix 94	AK4	D	327	337	Right-handed alpha
Helix 95	AK5	D	338	341	Right-handed 310
Helix 96	AK6	D	350	354	Right-handed 310
Helix 97	AK7	D	367	380	Right-handed alpha
Helix 98	AK8	D	401	406	Right-handed 310
Helix 99	AK9	D	420	432	Right-handed alpha
Helix 100	AL1	D	433	438	Right-handed alpha
Helix 101	AL2	D	446	454	Right-handed alpha
Helix 102	AL3	D	461	479	Right-handed alpha
Helix 103	AL4	D	488	493	Right-handed alpha
Helix 104	AL5	D	498	506	Right-handed alpha
Helix 105	AL6	D	516	524	Right-handed alpha
Helix 106	AL7	D	533	552	Right-handed alpha
Helix 107	AL8	D	569	580	Right-handed alpha
Helix 108	AL9	D	590	595	Right-handed alpha
Helix 109	AM1	D	598	612	Right-handed alpha
Helix 110	AM2	D	625	630	Right-handed alpha
Helix 111	AM3	D	640	651	Right-handed alpha
Helix 112	AM4	D	669	677	Right-handed alpha
Helix 113	AM5	D	678	682	Right-handed 310
Helix 114	AM6	D	693	705	Right-handed alpha
Helix 115	AM7	D	708	722	Right-handed alpha
Helix 116	AM8	D	729	744	Right-handed alpha
Helix 117	AM9	D	746	758	Right-handed alpha
Helix 118	AN1	E	245	256	Right-handed alpha
Helix 119	AN2	E	257	260	Right-handed 310
Helix 120	AN3	E	262	270	Right-handed alpha
Helix 121	AN4	E	286	298	Right-handed alpha
Helix 122	AN5	E	309	311	Right-handed 310
Helix 123	AN6	E	317	324	Right-handed alpha
Helix 124	AN7	E	327	338	Right-handed alpha
Helix 125	AN8	E	339	341	Right-handed 310
Helix 126	AN9	E	351	354	Right-handed 310
Helix 127	AO1	E	366	381	Right-handed alpha
Helix 128	AO2	E	396	400	Right-handed 310
Helix 129	AO3	E	401	405	Right-handed 310
Helix 130	AO4	E	420	438	Right-handed alpha
Helix 131	AO5	E	446	454	Right-handed alpha
Helix 132	AO6	E	458	475	Right-handed alpha
Helix 133	AO7	E	498	509	Right-handed alpha
Helix 134	AO8	E	518	524	Right-handed alpha
Helix 135	AO9	E	532	552	Right-handed alpha
Helix 136	AP1	E	570	582	Right-handed alpha
Helix 137	AP2	E	590	595	Right-handed alpha
Helix 138	AP3	E	598	614	Right-handed alpha
Helix 139	AP4	E	625	630	Right-handed alpha
Helix 140	AP5	E	640	651	Right-handed alpha
Helix 141	AP6	E	669	677	Right-handed alpha
Helix 142	AP7	E	678	682	Right-handed 310
Helix 143	AP8	E	693	705	Right-handed alpha
Helix 144	AP9	E	708	723	Right-handed alpha
Helix 145	AQ1	E	730	743	Right-handed alpha
Helix 146	AQ2	E	747	758	Right-handed alpha
Helix 147	AQ3	F	246	255	Right-handed alpha
Helix 148	AQ4	F	257	261	Right-handed 310
Helix 149	AQ5	F	262	270	Right-handed alpha
Helix 150	AQ6	F	286	298	Right-handed alpha
Helix 151	AQ7	F	309	312	Right-handed 310
Helix 152	AQ8	F	320	327	Right-handed alpha
Helix 153	AQ9	F	327	337	Right-handed alpha
Helix 154	AR1	F	350	355	Right-handed alpha
Helix 155	AR2	F	367	380	Right-handed alpha
Helix 156	AR3	F	396	400	Right-handed 310
Helix 157	AR4	F	421	438	Right-handed alpha
Helix 158	AR5	F	446	454	Right-handed alpha
Helix 159	AR6	F	458	478	Right-handed alpha
Helix 160	AR7	F	491	495	Right-handed 310
Helix 161	AR8	F	498	506	Right-handed alpha
Helix 162	AR9	F	518	523	Right-handed alpha
Helix 163	AS1	F	532	552	Right-handed alpha
Helix 164	AS2	F	570	582	Right-handed alpha
Helix 165	AS3	F	590	595	Right-handed alpha
Helix 166	AS4	F	598	612	Right-handed alpha
Helix 167	AS5	F	625	630	Right-handed alpha
Helix 168	AS6	F	640	651	Right-handed alpha
Helix 169	AS7	F	669	677	Right-handed alpha
Helix 170	AS8	F	678	682	Right-handed 310
Helix 171	AS9	F	693	704	Right-handed alpha
Helix 172	AT1	F	708	721	Right-handed alpha
Helix 173	AT2	F	729	741	Right-handed alpha
Helix 174	AT3	F	747	757	Right-handed alpha
Helix 175	AT4	G	3	15	Right-handed alpha
Helix 176	AT5	G	32	50	Right-handed alpha
Helix 177	AT6	G	52	71	Right-handed alpha
Helix 178	AT7	G	72	90	Right-handed alpha
Helix 179	AT8	G	92	110	Right-handed alpha
Helix 180	AT9	G	116	130	Right-handed alpha
Helix 181	AU1	G	133	151	Right-handed alpha
Helix 182	AU2	G	153	171	Right-handed alpha
Helix 183	AU3	G	173	189	Right-handed alpha
Helix 184	AU4	G	194	212	Right-handed alpha
Helix 185	AU5	G	214	229	Right-handed alpha
Helix 186	AU6	G	229	234	Right-handed alpha
Helix 187	AU7	G	235	251	Right-handed alpha
Helix 188	AU8	G	252	267	Right-handed alpha
Helix 189	AU9	G	270	291	Right-handed alpha
Helix 190	AV1	H	3	15	Right-handed alpha
Helix 191	AV2	H	32	47	Right-handed alpha
Helix 192	AV3	H	62	71	Right-handed alpha
Helix 193	AV4	H	72	90	Right-handed alpha
Helix 194	AV5	H	92	110	Right-handed alpha
Helix 195	AV6	H	112	130	Right-handed alpha
Helix 196	AV7	H	133	151	Right-handed alpha
Helix 197	AV8	H	153	171	Right-handed alpha
Helix 198	AV9	H	173	189	Right-handed alpha
Helix 199	AW1	H	194	212	Right-handed alpha
Helix 200	AW2	H	214	229	Right-handed alpha
Helix 201	AW3	H	229	234	Right-handed alpha
Helix 202	AW4	H	235	251	Right-handed alpha
Helix 203	AW5	H	252	267	Right-handed alpha
Helix 204	AW6	H	270	291	Right-handed alpha
Helix 205	AW7	I	3	15	Right-handed alpha
Helix 206	AW8	I	32	50	Right-handed alpha
Helix 207	AW9	I	52	71	Right-handed alpha
Helix 208	AX1	I	72	91	Right-handed alpha
Helix 209	AX2	I	92	110	Right-handed alpha
Helix 210	AX3	I	116	130	Right-handed alpha
Helix 211	AX4	I	133	151	Right-handed alpha
Helix 212	AX5	I	153	171	Right-handed alpha
Helix 213	AX6	I	173	189	Right-handed alpha
Helix 214	AX7	I	198	212	Right-handed alpha
Helix 215	AX8	I	214	229	Right-handed alpha
Helix 216	AX9	I	229	234	Right-handed alpha
Helix 217	AY1	I	235	251	Right-handed alpha
Helix 218	AY2	I	252	267	Right-handed alpha
Helix 219	AY3	I	270	291	Right-handed alpha
Helix 220	AY4	J	28	86	Right-handed alpha
Helix 221	AY5	K	192	257	Right-handed alpha
Helix 222	AY6	L	434	456	Right-handed alpha
Helix 223	AY7	L	459	499	Right-handed alpha
Helix 224	AY8	L	590	649	Right-handed alpha

There are 21 sheets in PDB entry 9NLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	307	first strand
Strand 2	A	344	349	parallel
Strand 3	A	388	394	parallel
Strand 4	A	277	280	parallel
Strand 5	A	412	415	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	589	first strand
Strand 2	A	620	623	parallel
Strand 3	A	662	667	parallel
Strand 4	A	558	563	parallel
Strand 5	A	684	687	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	33	first strand
Strand 2	B	78	81	parallel
Strand 3	B	44	47	anti-parallel
Strand 4	B	64	70	parallel
Strand 5	B	57	60	anti-parallel
Strand 6	B	96	101	anti-parallel
Strand 7	B	27	33	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	162	first strand
Strand 2	B	165	177	anti-parallel
Strand 3	B	113	123	anti-parallel
Strand 4	B	203	207	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	196	197	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	307	first strand
Strand 2	B	344	349	parallel
Strand 3	B	388	394	parallel
Strand 4	B	277	280	parallel
Strand 5	B	412	415	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	589	first strand
Strand 2	B	619	623	parallel
Strand 3	B	662	667	parallel
Strand 4	B	561	563	parallel
Strand 5	B	686	687	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	64	70	parallel
Strand 3	C	57	60	anti-parallel
Strand 4	C	96	101	anti-parallel
Strand 5	C	27	32	anti-parallel
Strand 6	C	78	80	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	162	first strand
Strand 2	C	165	177	anti-parallel
Strand 3	C	113	123	anti-parallel
Strand 4	C	203	208	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	152	first strand
Strand 2	C	196	197	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	348	first strand
Strand 2	C	388	394	parallel
Strand 3	C	277	280	parallel
Strand 4	C	412	415	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	589	first strand
Strand 2	C	620	623	parallel
Strand 3	C	662	667	parallel
Strand 4	C	558	563	parallel
Strand 5	C	684	687	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	64	70	parallel
Strand 3	D	57	60	anti-parallel
Strand 4	D	96	101	anti-parallel
Strand 5	D	27	32	anti-parallel
Strand 6	D	78	80	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	162	first strand
Strand 2	D	165	177	anti-parallel
Strand 3	D	113	123	anti-parallel
Strand 4	D	203	208	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	152	first strand
Strand 2	D	196	197	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	306	first strand
Strand 2	D	344	348	parallel
Strand 3	D	388	394	parallel
Strand 4	D	277	280	parallel
Strand 5	D	412	415	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	585	589	first strand
Strand 2	D	618	624	parallel
Strand 3	D	660	667	parallel
Strand 4	D	557	563	parallel
Strand 5	D	684	687	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	307	first strand
Strand 2	E	344	349	parallel
Strand 3	E	388	394	parallel
Strand 4	E	276	280	parallel
Strand 5	E	412	415	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	585	589	first strand
Strand 2	E	619	623	parallel
Strand 3	E	662	667	parallel
Strand 4	E	558	563	parallel
Strand 5	E	684	687	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	307	first strand
Strand 2	F	344	349	parallel
Strand 3	F	388	394	parallel
Strand 4	F	276	280	parallel
Strand 5	F	412	415	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	585	589	first strand
Strand 2	F	618	623	parallel
Strand 3	F	660	667	parallel
Strand 4	F	557	563	parallel
Strand 5	F	684	687	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NLY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NLY