Analysis of interatomic Contacts of Structural Units in PDB entry:
9NM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NM1 entry

There are 7 chains in PDB entry 9NM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 238	ALA 758
B	LYS 217	ALA 758
C	LYS 217	ALA 758
D	SER 218	ALA 758
E	ALA 228	ALA 758
F	ASP 245	ALA 758
K	GLY 169	ALA 180

There are162 helices in PDB entry 9NM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	245	256	Right-handed alpha
Helix 2	AA2	A	262	270	Right-handed alpha
Helix 3	AA3	A	286	298	Right-handed alpha
Helix 4	AA4	A	309	311	Right-handed 310
Helix 5	AA5	A	320	325	Right-handed alpha
Helix 6	AA6	A	327	337	Right-handed alpha
Helix 7	AA7	A	367	380	Right-handed alpha
Helix 8	AA8	A	420	432	Right-handed alpha
Helix 9	AA9	A	433	438	Right-handed alpha
Helix 10	AB1	A	446	454	Right-handed alpha
Helix 11	AB2	A	460	478	Right-handed alpha
Helix 12	AB3	A	498	509	Right-handed alpha
Helix 13	AB4	A	516	523	Right-handed alpha
Helix 14	AB5	A	533	552	Right-handed alpha
Helix 15	AB6	A	570	580	Right-handed alpha
Helix 16	AB7	A	590	595	Right-handed alpha
Helix 17	AB8	A	598	612	Right-handed alpha
Helix 18	AB9	A	640	651	Right-handed alpha
Helix 19	AC1	A	669	677	Right-handed alpha
Helix 20	AC2	A	694	705	Right-handed alpha
Helix 21	AC3	A	708	723	Right-handed alpha
Helix 22	AC4	A	729	743	Right-handed alpha
Helix 23	AC5	A	745	758	Right-handed alpha
Helix 24	AC6	B	235	239	Right-handed 310
Helix 25	AC7	B	245	255	Right-handed alpha
Helix 26	AC8	B	262	270	Right-handed alpha
Helix 27	AC9	B	287	295	Right-handed alpha
Helix 28	AD1	B	320	325	Right-handed alpha
Helix 29	AD2	B	327	337	Right-handed alpha
Helix 30	AD3	B	350	354	Right-handed 310
Helix 31	AD4	B	367	380	Right-handed alpha
Helix 32	AD5	B	396	400	Right-handed 310
Helix 33	AD6	B	402	406	Right-handed 310
Helix 34	AD7	B	420	432	Right-handed alpha
Helix 35	AD8	B	433	438	Right-handed alpha
Helix 36	AD9	B	446	454	Right-handed alpha
Helix 37	AE1	B	458	478	Right-handed alpha
Helix 38	AE2	B	490	495	Right-handed 310
Helix 39	AE3	B	498	506	Right-handed alpha
Helix 40	AE4	B	516	523	Right-handed alpha
Helix 41	AE5	B	532	551	Right-handed alpha
Helix 42	AE6	B	569	580	Right-handed alpha
Helix 43	AE7	B	598	613	Right-handed alpha
Helix 44	AE8	B	640	651	Right-handed alpha
Helix 45	AE9	B	669	677	Right-handed alpha
Helix 46	AF1	B	678	682	Right-handed 310
Helix 47	AF2	B	693	705	Right-handed alpha
Helix 48	AF3	B	709	723	Right-handed alpha
Helix 49	AF4	B	729	743	Right-handed alpha
Helix 50	AF5	B	746	758	Right-handed alpha
Helix 51	AF6	C	245	255	Right-handed alpha
Helix 52	AF7	C	262	269	Right-handed alpha
Helix 53	AF8	C	286	296	Right-handed alpha
Helix 54	AF9	C	318	325	Right-handed alpha
Helix 55	AG1	C	327	337	Right-handed alpha
Helix 56	AG2	C	350	354	Right-handed 310
Helix 57	AG3	C	369	380	Right-handed alpha
Helix 58	AG4	C	420	432	Right-handed alpha
Helix 59	AG5	C	433	438	Right-handed alpha
Helix 60	AG6	C	446	454	Right-handed alpha
Helix 61	AG7	C	458	476	Right-handed alpha
Helix 62	AG8	C	498	506	Right-handed alpha
Helix 63	AG9	C	515	523	Right-handed alpha
Helix 64	AH1	C	533	552	Right-handed alpha
Helix 65	AH2	C	569	582	Right-handed alpha
Helix 66	AH3	C	591	595	Right-handed 310
Helix 67	AH4	C	598	613	Right-handed alpha
Helix 68	AH5	C	625	629	Right-handed 310
Helix 69	AH6	C	640	651	Right-handed alpha
Helix 70	AH7	C	669	676	Right-handed alpha
Helix 71	AH8	C	694	705	Right-handed alpha
Helix 72	AH9	C	708	722	Right-handed alpha
Helix 73	AI1	C	729	744	Right-handed alpha
Helix 74	AI2	C	746	758	Right-handed alpha
Helix 75	AI3	D	235	239	Right-handed 310
Helix 76	AI4	D	246	255	Right-handed alpha
Helix 77	AI5	D	262	270	Right-handed alpha
Helix 78	AI6	D	288	297	Right-handed alpha
Helix 79	AI7	D	318	323	Right-handed alpha
Helix 80	AI8	D	327	337	Right-handed alpha
Helix 81	AI9	D	338	341	Right-handed 310
Helix 82	AJ1	D	350	354	Right-handed 310
Helix 83	AJ2	D	367	380	Right-handed alpha
Helix 84	AJ3	D	401	406	Right-handed 310
Helix 85	AJ4	D	420	432	Right-handed alpha
Helix 86	AJ5	D	433	438	Right-handed alpha
Helix 87	AJ6	D	446	454	Right-handed alpha
Helix 88	AJ7	D	458	479	Right-handed alpha
Helix 89	AJ8	D	488	493	Right-handed alpha
Helix 90	AJ9	D	498	506	Right-handed alpha
Helix 91	AK1	D	516	524	Right-handed alpha
Helix 92	AK2	D	533	552	Right-handed alpha
Helix 93	AK3	D	569	580	Right-handed alpha
Helix 94	AK4	D	590	595	Right-handed alpha
Helix 95	AK5	D	598	612	Right-handed alpha
Helix 96	AK6	D	625	630	Right-handed alpha
Helix 97	AK7	D	640	651	Right-handed alpha
Helix 98	AK8	D	669	677	Right-handed alpha
Helix 99	AK9	D	678	682	Right-handed 310
Helix 100	AL1	D	693	705	Right-handed alpha
Helix 101	AL2	D	708	722	Right-handed alpha
Helix 102	AL3	D	729	744	Right-handed alpha
Helix 103	AL4	D	746	758	Right-handed alpha
Helix 104	AL5	E	245	256	Right-handed alpha
Helix 105	AL6	E	257	260	Right-handed 310
Helix 106	AL7	E	262	270	Right-handed alpha
Helix 107	AL8	E	286	298	Right-handed alpha
Helix 108	AL9	E	309	311	Right-handed 310
Helix 109	AM1	E	317	324	Right-handed alpha
Helix 110	AM2	E	327	338	Right-handed alpha
Helix 111	AM3	E	339	341	Right-handed 310
Helix 112	AM4	E	351	354	Right-handed 310
Helix 113	AM5	E	366	381	Right-handed alpha
Helix 114	AM6	E	396	400	Right-handed 310
Helix 115	AM7	E	401	405	Right-handed 310
Helix 116	AM8	E	420	438	Right-handed alpha
Helix 117	AM9	E	446	454	Right-handed alpha
Helix 118	AN1	E	458	475	Right-handed alpha
Helix 119	AN2	E	498	509	Right-handed alpha
Helix 120	AN3	E	518	524	Right-handed alpha
Helix 121	AN4	E	532	552	Right-handed alpha
Helix 122	AN5	E	570	582	Right-handed alpha
Helix 123	AN6	E	590	595	Right-handed alpha
Helix 124	AN7	E	598	614	Right-handed alpha
Helix 125	AN8	E	625	630	Right-handed alpha
Helix 126	AN9	E	640	651	Right-handed alpha
Helix 127	AO1	E	669	677	Right-handed alpha
Helix 128	AO2	E	678	682	Right-handed 310
Helix 129	AO3	E	693	705	Right-handed alpha
Helix 130	AO4	E	708	723	Right-handed alpha
Helix 131	AO5	E	730	744	Right-handed alpha
Helix 132	AO6	E	746	758	Right-handed alpha
Helix 133	AO7	F	245	246	Right-handed 310
Helix 134	AO8	F	248	248	Right-handed 310
Helix 135	AO9	F	249	255	Right-handed alpha
Helix 136	AP1	F	257	261	Right-handed 310
Helix 137	AP2	F	262	270	Right-handed alpha
Helix 138	AP3	F	286	298	Right-handed alpha
Helix 139	AP4	F	309	312	Right-handed 310
Helix 140	AP5	F	317	327	Right-handed alpha
Helix 141	AP6	F	327	337	Right-handed alpha
Helix 142	AP7	F	350	355	Right-handed alpha
Helix 143	AP8	F	367	380	Right-handed alpha
Helix 144	AP9	F	396	400	Right-handed 310
Helix 145	AQ1	F	420	438	Right-handed alpha
Helix 146	AQ2	F	446	454	Right-handed alpha
Helix 147	AQ3	F	458	478	Right-handed alpha
Helix 148	AQ4	F	491	495	Right-handed 310
Helix 149	AQ5	F	498	506	Right-handed alpha
Helix 150	AQ6	F	518	523	Right-handed alpha
Helix 151	AQ7	F	532	552	Right-handed alpha
Helix 152	AQ8	F	570	582	Right-handed alpha
Helix 153	AQ9	F	590	595	Right-handed alpha
Helix 154	AR1	F	598	612	Right-handed alpha
Helix 155	AR2	F	625	630	Right-handed alpha
Helix 156	AR3	F	640	651	Right-handed alpha
Helix 157	AR4	F	669	676	Right-handed alpha
Helix 158	AR5	F	677	682	Right-handed 310
Helix 159	AR6	F	693	704	Right-handed alpha
Helix 160	AR7	F	708	721	Right-handed alpha
Helix 161	AR8	F	729	744	Right-handed alpha
Helix 162	AR9	F	749	757	Right-handed alpha

There are 12 sheets in PDB entry 9NM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	307	first strand
Strand 2	A	344	349	parallel
Strand 3	A	388	394	parallel
Strand 4	A	277	280	parallel
Strand 5	A	412	415	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	589	first strand
Strand 2	A	620	623	parallel
Strand 3	A	662	667	parallel
Strand 4	A	558	563	parallel
Strand 5	A	684	687	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	307	first strand
Strand 2	B	344	349	parallel
Strand 3	B	388	394	parallel
Strand 4	B	277	280	parallel
Strand 5	B	412	415	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	589	first strand
Strand 2	B	619	623	parallel
Strand 3	B	663	667	parallel
Strand 4	B	561	563	parallel
Strand 5	B	686	687	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	348	first strand
Strand 2	C	388	394	parallel
Strand 3	C	277	280	parallel
Strand 4	C	412	415	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	589	first strand
Strand 2	C	620	623	parallel
Strand 3	C	662	667	parallel
Strand 4	C	558	563	parallel
Strand 5	C	684	687	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	306	first strand
Strand 2	D	344	348	parallel
Strand 3	D	388	394	parallel
Strand 4	D	277	280	parallel
Strand 5	D	412	415	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	585	589	first strand
Strand 2	D	618	624	parallel
Strand 3	D	660	667	parallel
Strand 4	D	557	563	parallel
Strand 5	D	684	687	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	307	first strand
Strand 2	E	344	349	parallel
Strand 3	E	388	394	parallel
Strand 4	E	276	280	parallel
Strand 5	E	412	415	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	585	589	first strand
Strand 2	E	619	623	parallel
Strand 3	E	662	667	parallel
Strand 4	E	558	563	parallel
Strand 5	E	684	687	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	276	280	first strand
Strand 2	F	388	394	parallel
Strand 3	F	344	349	parallel
Strand 4	F	304	307	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	585	589	first strand
Strand 2	F	618	623	parallel
Strand 3	F	660	667	parallel
Strand 4	F	557	563	parallel
Strand 5	F	684	687	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NM1