Analysis of interatomic Contacts of Structural Units in PDB entry:
9NMS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NMS entry

There are 4 chains in PDB entry 9NMS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 14	PHE 325
B	SER 14	PHE 325
C	SER 14	PHE 325
D	SER 14	PHE 325

There are 35 helices in PDB entry 9NMS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	42	Right-handed 310
Helix 2	AA2	A	43	51	Right-handed alpha
Helix 3	AA3	A	52	83	Right-handed alpha
Helix 4	AA4	A	105	118	Right-handed alpha
Helix 5	AA5	A	131	161	Right-handed alpha
Helix 6	AA6	A	162	168	Right-handed 310
Helix 7	AA7	A	252	259	Right-handed alpha
Helix 8	AA8	A	289	293	Right-handed 310
Helix 9	AA9	A	315	318	Right-handed 310
Helix 10	AB1	B	39	42	Right-handed 310
Helix 11	AB2	B	43	51	Right-handed alpha
Helix 12	AB3	B	52	83	Right-handed alpha
Helix 13	AB4	B	105	118	Right-handed alpha
Helix 14	AB5	B	131	161	Right-handed alpha
Helix 15	AB6	B	162	168	Right-handed 310
Helix 16	AB7	B	252	259	Right-handed alpha
Helix 17	AB8	B	289	293	Right-handed 310
Helix 18	AB9	B	315	318	Right-handed 310
Helix 19	AC1	C	38	42	Right-handed 310
Helix 20	AC2	C	43	51	Right-handed alpha
Helix 21	AC3	C	52	83	Right-handed alpha
Helix 22	AC4	C	105	118	Right-handed alpha
Helix 23	AC5	C	131	161	Right-handed alpha
Helix 24	AC6	C	162	168	Right-handed 310
Helix 25	AC7	C	252	259	Right-handed alpha
Helix 26	AC8	C	289	293	Right-handed 310
Helix 27	AC9	C	315	318	Right-handed 310
Helix 28	AD1	D	43	51	Right-handed alpha
Helix 29	AD2	D	52	83	Right-handed alpha
Helix 30	AD3	D	105	118	Right-handed alpha
Helix 31	AD4	D	131	161	Right-handed alpha
Helix 32	AD5	D	162	168	Right-handed 310
Helix 33	AD6	D	252	259	Right-handed alpha
Helix 34	AD7	D	289	293	Right-handed 310
Helix 35	AD8	D	315	318	Right-handed 310

There are 20 sheets in PDB entry 9NMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	184	193	anti-parallel
Strand 3	A	177	181	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	184	193	anti-parallel
Strand 3	A	241	246	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	222	first strand
Strand 2	A	199	211	anti-parallel
Strand 3	A	266	275	anti-parallel
Strand 4	A	281	288	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	322	323	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	305	first strand
Strand 2	A	311	313	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	184	193	anti-parallel
Strand 3	B	177	181	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	184	193	anti-parallel
Strand 3	B	241	246	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	222	first strand
Strand 2	B	199	211	anti-parallel
Strand 3	B	266	275	anti-parallel
Strand 4	B	281	288	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	322	323	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	312	313	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	184	193	anti-parallel
Strand 3	C	177	181	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	184	193	anti-parallel
Strand 3	C	241	246	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	222	first strand
Strand 2	C	199	211	anti-parallel
Strand 3	C	266	275	anti-parallel
Strand 4	C	281	288	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	298	first strand
Strand 2	C	322	323	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	304	first strand
Strand 2	C	312	313	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	171	first strand
Strand 2	D	184	193	anti-parallel
Strand 3	D	177	181	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	171	first strand
Strand 2	D	184	193	anti-parallel
Strand 3	D	241	246	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	222	first strand
Strand 2	D	199	211	anti-parallel
Strand 3	D	266	275	anti-parallel
Strand 4	D	281	288	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	298	first strand
Strand 2	D	322	323	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	305	first strand
Strand 2	D	311	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NMS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NMS