Analysis of interatomic Contacts of Structural Units in PDB entry:
9NMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NMZ entry

There are 7 chains in PDB entry 9NMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LEU 121
B
 LYS 1GLY 124
C
 LYS 1PRO 122
D
 LYS 1LEU 121
E
 LYS 1PRO 122
F
 LYS 1ALA 123
G
 LYS 1SER 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 9NMZ

There are 14 sheets in PDB entry 9NMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 28first strand
Strand 2
A
2 12anti-parallel
Strand 3
A
93 102parallel
Strand 4
A
80 89anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 45first strand
Strand 2
A
52 64anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
110 118anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 28first strand
Strand 2
B
2 13anti-parallel
Strand 3
B
93 102parallel
Strand 4
B
80 89anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 46first strand
Strand 2
B
51 64anti-parallel
Strand 3
B
67 76anti-parallel
Strand 4
B
109 118anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 28first strand
Strand 2
C
2 13anti-parallel
Strand 3
C
93 102parallel
Strand 4
C
80 89anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 46first strand
Strand 2
C
51 64anti-parallel
Strand 3
C
67 76anti-parallel
Strand 4
C
109 118anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 28first strand
Strand 2
D
2 13anti-parallel
Strand 3
D
93 102parallel
Strand 4
D
80 89anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 44first strand
Strand 2
D
53 64anti-parallel
Strand 3
D
67 76anti-parallel
Strand 4
D
109 118anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
16 28first strand
Strand 2
E
2 13anti-parallel
Strand 3
E
93 102parallel
Strand 4
E
80 89anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 46first strand
Strand 2
E
51 64anti-parallel
Strand 3
E
67 76anti-parallel
Strand 4
E
109 118anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
16 28first strand
Strand 2
F
2 13anti-parallel
Strand 3
F
93 102parallel
Strand 4
F
80 89anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
35 46first strand
Strand 2
F
51 64anti-parallel
Strand 3
F
67 76anti-parallel
Strand 4
F
109 118anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
19 28first strand
Strand 2
G
2 11anti-parallel
Strand 3
G
93 102parallel
Strand 4
G
80 89anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
35 45first strand
Strand 2
G
52 64anti-parallel
Strand 3
G
67 76anti-parallel
Strand 4
G
109 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il