Analysis of interatomic Contacts of Structural Units in PDB entry:
9NN6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NN6 entry

There are 2 chains in PDB entry 9NN6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 32PHE 663
B
 LYS 57LEU 88
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 9NN6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 62Right-handed alpha
Helix 2
AA2
A
66 72Right-handed alpha
Helix 3
AA3
A
95 97Right-handed 310
Helix 4
AA4
A
119 123Right-handed 310
Helix 5
AA5
A
126 128Right-handed 310
Helix 6
AA6
A
422 427Right-handed alpha
Helix 7
AA7
A
496 501Right-handed 310
Helix 8
AA8
A
558 561Right-handed 310
Helix 9
AA9
A
642 647Right-handed alpha
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There are 7 sheets in PDB entry 9NN6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
41 43anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
130 137anti-parallel
Strand 3
A
151 157anti-parallel
Strand 4
A
99 103parallel
Strand 5
A
106 108anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 83first strand
Strand 2
A
86 91anti-parallel
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There are 24 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 564first strand
Strand 2
A
543 556anti-parallel
Strand 3
A
571 579anti-parallel
Strand 4
A
587 596anti-parallel
Strand 5
A
612 621anti-parallel
Strand 6
A
627 634anti-parallel
Strand 7
A
654 663anti-parallel
Strand 8
A
165 175anti-parallel
Strand 9
A
183 195anti-parallel
Strand 10
A
199 210anti-parallel
Strand 11
A
231 243anti-parallel
Strand 12
A
251 264anti-parallel
Strand 13
A
268 281anti-parallel
Strand 14
A
289 301anti-parallel
Strand 15
A
310 325anti-parallel
Strand 16
A
330 344anti-parallel
Strand 17
A
356 370anti-parallel
Strand 18
A
376 387anti-parallel
Strand 19
A
391 402anti-parallel
Strand 20
A
409 419anti-parallel
Strand 21
A
450 462anti-parallel
Strand 22
A
472 487anti-parallel
Strand 23
A
521 537anti-parallel
Strand 24
A
543 556anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
225 226anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 434first strand
Strand 2
A
439 442anti-parallel
Strand 3
A
515 519parallel
Strand 4
A
503 507anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 69first strand
Strand 2
B
74 75anti-parallel
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