Analysis of interatomic Contacts of Structural Units in PDB entry:
9NNB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NNB entry

There are 9 chains in PDB entry 9NNB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	LYS 550
D	MET 1	LYS 550
E	MET 1	LYS 550
F	MET 1	LYS 550
J	MET 1	PHE 211
N	G 4	C 76
B	MET 1	ARG 311
L	U 27	U 67
K	MET 1	PHE 211

There are126 helices in PDB entry 9NNB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	1	11	Right-handed alpha
Helix 2	AA2	C	13	26	Right-handed alpha
Helix 3	AA3	C	32	49	Right-handed alpha
Helix 4	AA4	C	99	119	Right-handed alpha
Helix 5	AA5	C	176	193	Right-handed alpha
Helix 6	AA6	C	224	228	Right-handed 310
Helix 7	AA7	C	238	256	Right-handed alpha
Helix 8	AA8	C	260	275	Right-handed alpha
Helix 9	AA9	C	280	285	Right-handed alpha
Helix 10	AB1	C	286	298	Right-handed alpha
Helix 11	AB2	C	301	306	Right-handed alpha
Helix 12	AB3	C	310	326	Right-handed alpha
Helix 13	AB4	C	353	357	Right-handed 310
Helix 14	AB5	C	358	379	Right-handed alpha
Helix 15	AB6	C	402	407	Right-handed alpha
Helix 16	AB7	C	408	417	Right-handed alpha
Helix 17	AB8	C	428	433	Right-handed alpha
Helix 18	AB9	C	434	435	Right-handed 310
Helix 19	AC1	C	436	438	Right-handed 310
Helix 20	AC2	C	465	473	Right-handed alpha
Helix 21	AC3	C	483	486	Right-handed 310
Helix 22	AC4	C	487	499	Right-handed alpha
Helix 23	AC5	C	504	519	Right-handed alpha
Helix 24	AC6	C	522	549	Right-handed alpha
Helix 25	AC7	D	2	11	Right-handed alpha
Helix 26	AC8	D	13	27	Right-handed alpha
Helix 27	AC9	D	38	49	Right-handed alpha
Helix 28	AD1	D	98	119	Right-handed alpha
Helix 29	AD2	D	176	193	Right-handed alpha
Helix 30	AD3	D	224	230	Right-handed 310
Helix 31	AD4	D	238	256	Right-handed alpha
Helix 32	AD5	D	309	326	Right-handed alpha
Helix 33	AD6	D	362	379	Right-handed alpha
Helix 34	AD7	D	384	388	Right-handed 310
Helix 35	AD8	D	402	407	Right-handed alpha
Helix 36	AD9	D	408	417	Right-handed alpha
Helix 37	AE1	D	428	433	Right-handed alpha
Helix 38	AE2	D	434	435	Right-handed 310
Helix 39	AE3	D	436	438	Right-handed 310
Helix 40	AE4	D	465	472	Right-handed alpha
Helix 41	AE5	D	483	486	Right-handed 310
Helix 42	AE6	D	487	499	Right-handed alpha
Helix 43	AE7	D	504	518	Right-handed alpha
Helix 44	AE8	D	522	547	Right-handed alpha
Helix 45	AE9	E	2	12	Right-handed alpha
Helix 46	AF1	E	13	26	Right-handed alpha
Helix 47	AF2	E	34	49	Right-handed alpha
Helix 48	AF3	E	98	119	Right-handed alpha
Helix 49	AF4	E	176	193	Right-handed alpha
Helix 50	AF5	E	204	208	Right-handed 310
Helix 51	AF6	E	224	230	Right-handed 310
Helix 52	AF7	E	238	255	Right-handed alpha
Helix 53	AF8	E	265	278	Right-handed alpha
Helix 54	AF9	E	282	286	Right-handed 310
Helix 55	AG1	E	288	305	Right-handed alpha
Helix 56	AG2	E	310	326	Right-handed alpha
Helix 57	AG3	E	355	357	Right-handed 310
Helix 58	AG4	E	358	379	Right-handed alpha
Helix 59	AG5	E	384	388	Right-handed 310
Helix 60	AG6	E	402	407	Right-handed alpha
Helix 61	AG7	E	408	417	Right-handed alpha
Helix 62	AG8	E	428	433	Right-handed alpha
Helix 63	AG9	E	434	435	Right-handed 310
Helix 64	AH1	E	436	438	Right-handed 310
Helix 65	AH2	E	465	473	Right-handed alpha
Helix 66	AH3	E	483	486	Right-handed 310
Helix 67	AH4	E	487	499	Right-handed alpha
Helix 68	AH5	E	507	519	Right-handed alpha
Helix 69	AH6	E	522	550	Right-handed alpha
Helix 70	AH7	F	3	11	Right-handed alpha
Helix 71	AH8	F	14	26	Right-handed alpha
Helix 72	AH9	F	28	31	Right-handed 310
Helix 73	AI1	F	32	49	Right-handed alpha
Helix 74	AI2	F	98	119	Right-handed alpha
Helix 75	AI3	F	176	193	Right-handed alpha
Helix 76	AI4	F	204	209	Right-handed 310
Helix 77	AI5	F	224	230	Right-handed 310
Helix 78	AI6	F	238	254	Right-handed alpha
Helix 79	AI7	F	264	271	Right-handed alpha
Helix 80	AI8	F	312	326	Right-handed alpha
Helix 81	AI9	F	358	379	Right-handed alpha
Helix 82	AJ1	F	412	417	Right-handed alpha
Helix 83	AJ2	F	428	433	Right-handed alpha
Helix 84	AJ3	F	465	473	Right-handed alpha
Helix 85	AJ4	F	483	486	Right-handed 310
Helix 86	AJ5	F	487	499	Right-handed alpha
Helix 87	AJ6	F	505	518	Right-handed alpha
Helix 88	AJ7	F	522	538	Right-handed alpha
Helix 89	AJ8	F	538	548	Right-handed alpha
Helix 90	AJ9	J	22	26	Right-handed 310
Helix 91	AK1	J	27	38	Right-handed alpha
Helix 92	AK2	J	64	68	Right-handed 310
Helix 93	AK3	J	89	96	Right-handed alpha
Helix 94	AK4	J	102	106	Right-handed 310
Helix 95	AK5	J	134	147	Right-handed alpha
Helix 96	AK6	J	152	164	Right-handed alpha
Helix 97	AK7	J	166	175	Right-handed alpha
Helix 98	AK8	J	181	195	Right-handed alpha
Helix 99	AK9	J	201	210	Right-handed alpha
Helix 100	AL1	B	2	12	Right-handed alpha
Helix 101	AL2	B	14	22	Right-handed alpha
Helix 102	AL3	B	24	27	Right-handed 310
Helix 103	AL4	B	48	62	Right-handed alpha
Helix 104	AL5	B	78	86	Right-handed alpha
Helix 105	AL6	B	100	104	Right-handed 310
Helix 106	AL7	B	105	115	Right-handed alpha
Helix 107	AL8	B	127	136	Right-handed alpha
Helix 108	AL9	B	155	164	Right-handed alpha
Helix 109	AM1	B	164	177	Right-handed alpha
Helix 110	AM2	B	198	200	Right-handed 310
Helix 111	AM3	B	201	215	Right-handed alpha
Helix 112	AM4	B	221	225	Right-handed 310
Helix 113	AM5	B	250	266	Right-handed alpha
Helix 114	AM6	B	270	288	Right-handed alpha
Helix 115	AM7	B	288	300	Right-handed alpha
Helix 116	AM8	B	300	308	Right-handed alpha
Helix 117	AM9	K	11	16	Right-handed alpha
Helix 118	AN1	K	22	26	Right-handed 310
Helix 119	AN2	K	27	40	Right-handed alpha
Helix 120	AN3	K	70	74	Right-handed 310
Helix 121	AN4	K	89	96	Right-handed alpha
Helix 122	AN5	K	102	106	Right-handed 310
Helix 123	AN6	K	134	147	Right-handed alpha
Helix 124	AN7	K	152	176	Right-handed alpha
Helix 125	AN8	K	181	198	Right-handed alpha
Helix 126	AN9	K	201	210	Right-handed alpha

There are 24 sheets in PDB entry 9NNB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	58	60	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	141	150	anti-parallel
Strand 3	C	68	72	anti-parallel
Strand 4	C	79	83	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	141	150	anti-parallel
Strand 3	C	157	164	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	203	first strand
Strand 2	C	390	395	parallel
Strand 3	C	421	425	parallel
Strand 4	C	88	92	parallel
Strand 5	C	440	442	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	337	first strand
Strand 2	C	340	347	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	58	60	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	82	first strand
Strand 2	D	64	74	anti-parallel
Strand 3	D	141	150	anti-parallel
Strand 4	D	157	164	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	203	first strand
Strand 2	D	390	394	parallel
Strand 3	D	420	425	parallel
Strand 4	D	88	92	parallel
Strand 5	D	440	442	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	335	first strand
Strand 2	D	342	347	anti-parallel
Strand 3	D	350	353	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	52	first strand
Strand 2	E	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	83	first strand
Strand 2	E	64	74	anti-parallel
Strand 3	E	141	150	anti-parallel
Strand 4	E	157	164	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	203	first strand
Strand 2	E	390	394	parallel
Strand 3	E	420	426	parallel
Strand 4	E	88	92	parallel
Strand 5	E	440	442	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	329	337	first strand
Strand 2	E	340	347	anti-parallel
Strand 3	E	350	353	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	52	first strand
Strand 2	F	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	83	first strand
Strand 2	F	64	72	anti-parallel
Strand 3	F	141	150	anti-parallel
Strand 4	F	159	164	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	203	first strand
Strand 2	F	390	395	parallel
Strand 3	F	421	426	parallel
Strand 4	F	88	92	parallel
Strand 5	F	440	442	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	329	335	first strand
Strand 2	F	342	347	anti-parallel
Strand 3	F	350	353	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	57	first strand
Strand 2	J	74	78	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	118	120	first strand
Strand 2	J	126	128	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	35	first strand
Strand 2	B	41	47	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	184	first strand
Strand 2	B	188	193	anti-parallel
Strand 3	B	91	96	anti-parallel
Strand 4	B	226	228	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	236	first strand
Strand 2	B	239	241	anti-parallel
Strand 3	B	247	248	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	56	first strand
Strand 2	K	75	78	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	118	120	first strand
Strand 2	K	126	128	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NNB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NNB