Analysis of interatomic Contacts of Structural Units in PDB entry:
9NNH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NNH entry

There are 12 chains in PDB entry 9NNH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	LYS 550
D	MET 1	LYS 550
E	MET 1	LYS 550
F	MET 1	LYS 550
J	MET 1	PHE 211
B	MET 1	ARG 311
A	MET 1	ARG 311
K	MET 1	THR 210
N	G 5	C 77
L	U 27	U 67
X	U 27	U 67
M	A 69	C 77

There are149 helices in PDB entry 9NNH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	2	11	Right-handed alpha
Helix 2	AA2	C	13	26	Right-handed alpha
Helix 3	AA3	C	32	49	Right-handed alpha
Helix 4	AA4	C	98	119	Right-handed alpha
Helix 5	AA5	C	176	193	Right-handed alpha
Helix 6	AA6	C	224	228	Right-handed 310
Helix 7	AA7	C	238	256	Right-handed alpha
Helix 8	AA8	C	260	275	Right-handed alpha
Helix 9	AA9	C	280	285	Right-handed alpha
Helix 10	AB1	C	286	298	Right-handed alpha
Helix 11	AB2	C	301	306	Right-handed alpha
Helix 12	AB3	C	310	326	Right-handed alpha
Helix 13	AB4	C	358	379	Right-handed alpha
Helix 14	AB5	C	402	407	Right-handed alpha
Helix 15	AB6	C	408	417	Right-handed alpha
Helix 16	AB7	C	428	433	Right-handed alpha
Helix 17	AB8	C	434	435	Right-handed 310
Helix 18	AB9	C	436	438	Right-handed 310
Helix 19	AC1	C	465	473	Right-handed alpha
Helix 20	AC2	C	483	486	Right-handed 310
Helix 21	AC3	C	487	499	Right-handed alpha
Helix 22	AC4	C	504	519	Right-handed alpha
Helix 23	AC5	C	522	549	Right-handed alpha
Helix 24	AC6	D	2	11	Right-handed alpha
Helix 25	AC7	D	13	26	Right-handed alpha
Helix 26	AC8	D	37	49	Right-handed alpha
Helix 27	AC9	D	98	119	Right-handed alpha
Helix 28	AD1	D	176	193	Right-handed alpha
Helix 29	AD2	D	224	230	Right-handed 310
Helix 30	AD3	D	238	255	Right-handed alpha
Helix 31	AD4	D	256	276	Right-handed alpha
Helix 32	AD5	D	287	299	Right-handed alpha
Helix 33	AD6	D	309	326	Right-handed alpha
Helix 34	AD7	D	355	357	Right-handed 310
Helix 35	AD8	D	361	379	Right-handed alpha
Helix 36	AD9	D	384	388	Right-handed 310
Helix 37	AE1	D	402	407	Right-handed alpha
Helix 38	AE2	D	408	417	Right-handed alpha
Helix 39	AE3	D	428	433	Right-handed alpha
Helix 40	AE4	D	434	435	Right-handed 310
Helix 41	AE5	D	436	438	Right-handed 310
Helix 42	AE6	D	465	473	Right-handed alpha
Helix 43	AE7	D	483	486	Right-handed 310
Helix 44	AE8	D	487	498	Right-handed alpha
Helix 45	AE9	D	504	519	Right-handed alpha
Helix 46	AF1	D	522	549	Right-handed alpha
Helix 47	AF2	E	2	11	Right-handed alpha
Helix 48	AF3	E	13	26	Right-handed alpha
Helix 49	AF4	E	34	49	Right-handed alpha
Helix 50	AF5	E	98	119	Right-handed alpha
Helix 51	AF6	E	176	193	Right-handed alpha
Helix 52	AF7	E	204	208	Right-handed 310
Helix 53	AF8	E	224	230	Right-handed 310
Helix 54	AF9	E	238	255	Right-handed alpha
Helix 55	AG1	E	265	278	Right-handed alpha
Helix 56	AG2	E	288	305	Right-handed alpha
Helix 57	AG3	E	310	326	Right-handed alpha
Helix 58	AG4	E	358	379	Right-handed alpha
Helix 59	AG5	E	384	388	Right-handed 310
Helix 60	AG6	E	402	407	Right-handed alpha
Helix 61	AG7	E	408	417	Right-handed alpha
Helix 62	AG8	E	428	433	Right-handed alpha
Helix 63	AG9	E	434	435	Right-handed 310
Helix 64	AH1	E	436	438	Right-handed 310
Helix 65	AH2	E	465	473	Right-handed alpha
Helix 66	AH3	E	483	486	Right-handed 310
Helix 67	AH4	E	487	499	Right-handed alpha
Helix 68	AH5	E	504	519	Right-handed alpha
Helix 69	AH6	E	522	550	Right-handed alpha
Helix 70	AH7	F	2	10	Right-handed alpha
Helix 71	AH8	F	13	26	Right-handed alpha
Helix 72	AH9	F	32	49	Right-handed alpha
Helix 73	AI1	F	98	119	Right-handed alpha
Helix 74	AI2	F	151	155	Right-handed alpha
Helix 75	AI3	F	176	193	Right-handed alpha
Helix 76	AI4	F	204	209	Right-handed 310
Helix 77	AI5	F	224	230	Right-handed 310
Helix 78	AI6	F	238	254	Right-handed alpha
Helix 79	AI7	F	261	270	Right-handed alpha
Helix 80	AI8	F	286	291	Right-handed alpha
Helix 81	AI9	F	292	301	Right-handed alpha
Helix 82	AJ1	F	303	307	Right-handed 310
Helix 83	AJ2	F	314	326	Right-handed alpha
Helix 84	AJ3	F	358	379	Right-handed alpha
Helix 85	AJ4	F	412	417	Right-handed alpha
Helix 86	AJ5	F	428	433	Right-handed alpha
Helix 87	AJ6	F	434	435	Right-handed 310
Helix 88	AJ7	F	436	438	Right-handed 310
Helix 89	AJ8	F	465	473	Right-handed alpha
Helix 90	AJ9	F	483	486	Right-handed 310
Helix 91	AK1	F	487	499	Right-handed alpha
Helix 92	AK2	F	504	518	Right-handed alpha
Helix 93	AK3	F	522	549	Right-handed alpha
Helix 94	AK4	J	10	16	Right-handed alpha
Helix 95	AK5	J	22	26	Right-handed 310
Helix 96	AK6	J	30	40	Right-handed alpha
Helix 97	AK7	J	64	68	Right-handed 310
Helix 98	AK8	J	89	96	Right-handed alpha
Helix 99	AK9	J	102	106	Right-handed 310
Helix 100	AL1	J	113	116	Right-handed 310
Helix 101	AL2	J	134	148	Right-handed alpha
Helix 102	AL3	J	152	164	Right-handed alpha
Helix 103	AL4	J	166	175	Right-handed alpha
Helix 104	AL5	J	181	195	Right-handed alpha
Helix 105	AL6	J	201	210	Right-handed alpha
Helix 106	AL7	B	2	12	Right-handed alpha
Helix 107	AL8	B	14	22	Right-handed alpha
Helix 108	AL9	B	24	27	Right-handed 310
Helix 109	AM1	B	48	62	Right-handed alpha
Helix 110	AM2	B	78	86	Right-handed alpha
Helix 111	AM3	B	105	116	Right-handed alpha
Helix 112	AM4	B	124	126	Right-handed 310
Helix 113	AM5	B	127	136	Right-handed alpha
Helix 114	AM6	B	155	164	Right-handed alpha
Helix 115	AM7	B	164	178	Right-handed alpha
Helix 116	AM8	B	201	215	Right-handed alpha
Helix 117	AM9	B	221	225	Right-handed 310
Helix 118	AN1	B	250	266	Right-handed alpha
Helix 119	AN2	B	270	288	Right-handed alpha
Helix 120	AN3	B	288	299	Right-handed alpha
Helix 121	AN4	B	300	309	Right-handed alpha
Helix 122	AN5	A	2	12	Right-handed alpha
Helix 123	AN6	A	14	22	Right-handed alpha
Helix 124	AN7	A	23	27	Right-handed 310
Helix 125	AN8	A	48	62	Right-handed alpha
Helix 126	AN9	A	78	85	Right-handed alpha
Helix 127	AO1	A	100	104	Right-handed 310
Helix 128	AO2	A	105	115	Right-handed alpha
Helix 129	AO3	A	124	126	Right-handed 310
Helix 130	AO4	A	127	136	Right-handed alpha
Helix 131	AO5	A	155	164	Right-handed alpha
Helix 132	AO6	A	164	178	Right-handed alpha
Helix 133	AO7	A	198	200	Right-handed 310
Helix 134	AO8	A	201	215	Right-handed alpha
Helix 135	AO9	A	250	266	Right-handed alpha
Helix 136	AP1	A	270	288	Right-handed alpha
Helix 137	AP2	A	288	309	Right-handed alpha
Helix 138	AP3	K	10	15	Right-handed alpha
Helix 139	AP4	K	31	40	Right-handed alpha
Helix 140	AP5	K	70	72	Right-handed 310
Helix 141	AP6	K	89	96	Right-handed alpha
Helix 142	AP7	K	102	106	Right-handed 310
Helix 143	AP8	K	113	116	Right-handed 310
Helix 144	AP9	K	134	148	Right-handed alpha
Helix 145	AQ1	K	152	166	Right-handed alpha
Helix 146	AQ2	K	166	177	Right-handed alpha
Helix 147	AQ3	K	178	180	Right-handed 310
Helix 148	AQ4	K	181	197	Right-handed alpha
Helix 149	AQ5	K	201	210	Right-handed alpha

There are 27 sheets in PDB entry 9NNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	58	60	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	83	first strand
Strand 2	C	64	74	anti-parallel
Strand 3	C	141	150	anti-parallel
Strand 4	C	154	164	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	203	first strand
Strand 2	C	390	395	parallel
Strand 3	C	420	425	parallel
Strand 4	C	88	92	parallel
Strand 5	C	440	442	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	337	first strand
Strand 2	C	340	347	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	58	60	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	82	first strand
Strand 2	D	64	74	anti-parallel
Strand 3	D	141	150	anti-parallel
Strand 4	D	159	164	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	203	first strand
Strand 2	D	390	395	parallel
Strand 3	D	420	425	parallel
Strand 4	D	88	92	parallel
Strand 5	D	440	442	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	335	first strand
Strand 2	D	342	347	anti-parallel
Strand 3	D	350	353	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	52	first strand
Strand 2	E	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	83	first strand
Strand 2	E	64	74	anti-parallel
Strand 3	E	141	150	anti-parallel
Strand 4	E	154	164	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	203	first strand
Strand 2	E	390	395	parallel
Strand 3	E	421	426	parallel
Strand 4	E	88	93	parallel
Strand 5	E	440	443	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	329	337	first strand
Strand 2	E	340	347	anti-parallel
Strand 3	E	350	353	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	52	first strand
Strand 2	F	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	83	first strand
Strand 2	F	64	72	anti-parallel
Strand 3	F	141	150	anti-parallel
Strand 4	F	157	164	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	203	first strand
Strand 2	F	390	395	parallel
Strand 3	F	420	426	parallel
Strand 4	F	88	92	parallel
Strand 5	F	440	442	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	332	335	first strand
Strand 2	F	342	345	anti-parallel
Strand 3	F	352	353	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	57	first strand
Strand 2	J	74	78	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	118	120	first strand
Strand 2	J	126	128	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	35	first strand
Strand 2	B	41	47	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	188	193	anti-parallel
Strand 3	B	181	184	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	188	193	anti-parallel
Strand 3	B	91	92	anti-parallel
Strand 4	B	228	229	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	236	first strand
Strand 2	B	239	241	anti-parallel
Strand 3	B	247	248	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	35	first strand
Strand 2	A	41	47	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	185	first strand
Strand 2	A	188	193	anti-parallel
Strand 3	A	91	97	anti-parallel
Strand 4	A	220	228	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	236	first strand
Strand 2	A	239	241	anti-parallel
Strand 3	A	247	248	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	57	first strand
Strand 2	K	74	78	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	118	120	first strand
Strand 2	K	126	128	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NNH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NNH