Analysis of interatomic Contacts of Structural Units in PDB entry:
9NNL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NNL entry

There are 8 chains in PDB entry 9NNL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	GLU 432
C	HIS 3607	LYS 3710
D	MET 1	GLU 432
F	MET 1	GLU 432
G	HIS 3607	LYS 3710
H	MET 1	GLU 432
A	MET 1	GLU 443
E	MET 1	GLU 443

There are124 helices in PDB entry 9NNL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	10	29	Right-handed alpha
Helix 2	AA2	B	46	49	Right-handed 310
Helix 3	AA3	B	70	78	Right-handed alpha
Helix 4	AA4	B	86	88	Right-handed 310
Helix 5	AA5	B	100	106	Right-handed alpha
Helix 6	AA6	B	109	125	Right-handed alpha
Helix 7	AA7	B	142	159	Right-handed alpha
Helix 8	AA8	B	180	196	Right-handed alpha
Helix 9	AA9	B	204	214	Right-handed alpha
Helix 10	AB1	B	221	237	Right-handed alpha
Helix 11	AB2	B	237	242	Right-handed alpha
Helix 12	AB3	B	249	258	Right-handed alpha
Helix 13	AB4	B	278	282	Right-handed 310
Helix 14	AB5	B	285	294	Right-handed alpha
Helix 15	AB6	B	295	299	Right-handed 310
Helix 16	AB7	B	304	308	Right-handed 310
Helix 17	AB8	B	322	337	Right-handed alpha
Helix 18	AB9	B	338	341	Right-handed 310
Helix 19	AC1	B	374	391	Right-handed alpha
Helix 20	AC2	B	395	400	Right-handed alpha
Helix 21	AC3	B	404	425	Right-handed alpha
Helix 22	AC4	C	3620	3635	Right-handed alpha
Helix 23	AC5	C	3666	3674	Right-handed 310
Helix 24	AC6	D	10	29	Right-handed alpha
Helix 25	AC7	D	41	46	Right-handed alpha
Helix 26	AC8	D	47	49	Right-handed 310
Helix 27	AC9	D	70	78	Right-handed alpha
Helix 28	AD1	D	86	88	Right-handed 310
Helix 29	AD2	D	100	106	Right-handed alpha
Helix 30	AD3	D	107	125	Right-handed alpha
Helix 31	AD4	D	142	159	Right-handed alpha
Helix 32	AD5	D	180	196	Right-handed alpha
Helix 33	AD6	D	203	214	Right-handed alpha
Helix 34	AD7	D	221	242	Right-handed alpha
Helix 35	AD8	D	249	258	Right-handed alpha
Helix 36	AD9	D	278	282	Right-handed 310
Helix 37	AE1	D	285	295	Right-handed alpha
Helix 38	AE2	D	296	299	Right-handed 310
Helix 39	AE3	D	304	308	Right-handed 310
Helix 40	AE4	D	322	337	Right-handed alpha
Helix 41	AE5	D	338	341	Right-handed 310
Helix 42	AE6	D	373	392	Right-handed alpha
Helix 43	AE7	D	395	400	Right-handed alpha
Helix 44	AE8	D	404	425	Right-handed alpha
Helix 45	AE9	F	10	29	Right-handed alpha
Helix 46	AF1	F	41	46	Right-handed alpha
Helix 47	AF2	F	47	49	Right-handed 310
Helix 48	AF3	F	70	78	Right-handed alpha
Helix 49	AF4	F	86	88	Right-handed 310
Helix 50	AF5	F	100	106	Right-handed alpha
Helix 51	AF6	F	112	125	Right-handed alpha
Helix 52	AF7	F	142	159	Right-handed alpha
Helix 53	AF8	F	180	196	Right-handed alpha
Helix 54	AF9	F	204	214	Right-handed alpha
Helix 55	AG1	F	221	242	Right-handed alpha
Helix 56	AG2	F	249	258	Right-handed alpha
Helix 57	AG3	F	278	282	Right-handed 310
Helix 58	AG4	F	285	294	Right-handed alpha
Helix 59	AG5	F	295	299	Right-handed 310
Helix 60	AG6	F	304	308	Right-handed 310
Helix 61	AG7	F	322	337	Right-handed alpha
Helix 62	AG8	F	338	341	Right-handed 310
Helix 63	AG9	F	374	391	Right-handed alpha
Helix 64	AH1	F	395	400	Right-handed alpha
Helix 65	AH2	F	404	428	Right-handed alpha
Helix 66	AH3	G	3620	3635	Right-handed alpha
Helix 67	AH4	G	3666	3674	Right-handed 310
Helix 68	AH5	H	10	29	Right-handed alpha
Helix 69	AH6	H	46	49	Right-handed 310
Helix 70	AH7	H	70	78	Right-handed alpha
Helix 71	AH8	H	86	88	Right-handed 310
Helix 72	AH9	H	100	106	Right-handed alpha
Helix 73	AI1	H	108	125	Right-handed alpha
Helix 74	AI2	H	142	159	Right-handed alpha
Helix 75	AI3	H	180	196	Right-handed alpha
Helix 76	AI4	H	204	213	Right-handed alpha
Helix 77	AI5	H	221	237	Right-handed alpha
Helix 78	AI6	H	238	241	Right-handed 310
Helix 79	AI7	H	249	258	Right-handed alpha
Helix 80	AI8	H	277	282	Right-handed 310
Helix 81	AI9	H	285	294	Right-handed alpha
Helix 82	AJ1	H	295	299	Right-handed 310
Helix 83	AJ2	H	304	308	Right-handed 310
Helix 84	AJ3	H	322	337	Right-handed alpha
Helix 85	AJ4	H	338	341	Right-handed 310
Helix 86	AJ5	H	374	391	Right-handed alpha
Helix 87	AJ6	H	395	400	Right-handed alpha
Helix 88	AJ7	H	404	427	Right-handed alpha
Helix 89	AJ8	A	10	28	Right-handed alpha
Helix 90	AJ9	A	71	80	Right-handed alpha
Helix 91	AK1	A	102	108	Right-handed alpha
Helix 92	AK2	A	110	113	Right-handed 310
Helix 93	AK3	A	114	129	Right-handed alpha
Helix 94	AK4	A	144	161	Right-handed alpha
Helix 95	AK5	A	182	198	Right-handed alpha
Helix 96	AK6	A	205	216	Right-handed alpha
Helix 97	AK7	A	223	244	Right-handed alpha
Helix 98	AK8	A	251	260	Right-handed alpha
Helix 99	AK9	A	277	284	Right-handed alpha
Helix 100	AL1	A	287	296	Right-handed alpha
Helix 101	AL2	A	297	301	Right-handed 310
Helix 102	AL3	A	306	310	Right-handed 310
Helix 103	AL4	A	324	336	Right-handed alpha
Helix 104	AL5	A	383	401	Right-handed alpha
Helix 105	AL6	A	404	410	Right-handed alpha
Helix 106	AL7	A	415	436	Right-handed alpha
Helix 107	AL8	E	10	29	Right-handed alpha
Helix 108	AL9	E	72	80	Right-handed alpha
Helix 109	AM1	E	102	108	Right-handed alpha
Helix 110	AM2	E	110	113	Right-handed 310
Helix 111	AM3	E	114	129	Right-handed alpha
Helix 112	AM4	E	144	161	Right-handed alpha
Helix 113	AM5	E	182	198	Right-handed alpha
Helix 114	AM6	E	206	217	Right-handed alpha
Helix 115	AM7	E	223	244	Right-handed alpha
Helix 116	AM8	E	251	260	Right-handed alpha
Helix 117	AM9	E	277	282	Right-handed alpha
Helix 118	AN1	E	287	296	Right-handed alpha
Helix 119	AN2	E	297	301	Right-handed 310
Helix 120	AN3	E	306	310	Right-handed 310
Helix 121	AN4	E	324	336	Right-handed alpha
Helix 122	AN5	E	383	400	Right-handed alpha
Helix 123	AN6	E	404	410	Right-handed alpha
Helix 124	AN7	E	415	435	Right-handed alpha

There are 18 sheets in PDB entry 9NNL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	4	9	parallel
Strand 4	B	132	138	parallel
Strand 5	B	163	170	parallel
Strand 6	B	198	203	parallel
Strand 7	B	265	271	parallel
Strand 8	B	364	371	anti-parallel
Strand 9	B	310	318	anti-parallel
Strand 10	B	349	354	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	58	61	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3648	3652	first strand
Strand 2	C	3660	3664	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3677	3681	first strand
Strand 2	C	3687	3696	anti-parallel
Strand 3	C	3702	3707	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	63	67	parallel
Strand 3	D	4	9	parallel
Strand 4	D	132	138	parallel
Strand 5	D	163	169	parallel
Strand 6	D	198	202	parallel
Strand 7	D	265	271	parallel
Strand 8	D	363	371	anti-parallel
Strand 9	D	310	319	anti-parallel
Strand 10	D	349	354	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	54	first strand
Strand 2	D	58	61	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	92	first strand
Strand 2	F	63	67	parallel
Strand 3	F	3	9	parallel
Strand 4	F	130	138	parallel
Strand 5	F	163	170	parallel
Strand 6	F	198	203	parallel
Strand 7	F	265	271	parallel
Strand 8	F	364	371	anti-parallel
Strand 9	F	310	318	anti-parallel
Strand 10	F	349	354	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	54	first strand
Strand 2	F	58	61	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3648	3653	first strand
Strand 2	G	3659	3664	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3677	3681	first strand
Strand 2	G	3687	3696	anti-parallel
Strand 3	G	3702	3707	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	92	first strand
Strand 2	H	63	67	parallel
Strand 3	H	4	9	parallel
Strand 4	H	132	138	parallel
Strand 5	H	163	170	parallel
Strand 6	H	198	203	parallel
Strand 7	H	265	271	parallel
Strand 8	H	363	371	anti-parallel
Strand 9	H	310	319	anti-parallel
Strand 10	H	349	354	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	54	first strand
Strand 2	H	58	61	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	3	9	parallel
Strand 3	A	132	138	parallel
Strand 4	A	165	171	parallel
Strand 5	A	200	204	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	352	356	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	68	first strand
Strand 2	E	3	9	parallel
Strand 3	E	132	138	parallel
Strand 4	E	165	172	parallel
Strand 5	E	200	205	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	61	63	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	272	first strand
Strand 2	E	373	381	anti-parallel
Strand 3	E	312	321	anti-parallel
Strand 4	E	351	356	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NNL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NNL