Analysis of interatomic Contacts of Structural Units in PDB entry:
9NNP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NNP entry

There are 4 chains in PDB entry 9NNP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 33	TYR 882
B	GLY 15	CYS 1045
C	MET 1	ALA 750
D	T 8	A 14

There are110 helices in PDB entry 9NNP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	57	Right-handed alpha
Helix 2	AA2	A	67	76	Right-handed alpha
Helix 3	AA3	A	102	114	Right-handed alpha
Helix 4	AA4	A	122	137	Right-handed alpha
Helix 5	AA5	A	144	150	Right-handed alpha
Helix 6	AA6	A	153	158	Right-handed 310
Helix 7	AA7	A	173	185	Right-handed alpha
Helix 8	AA8	A	185	199	Right-handed alpha
Helix 9	AA9	A	209	220	Right-handed alpha
Helix 10	AB1	A	226	228	Right-handed 310
Helix 11	AB2	A	229	234	Right-handed alpha
Helix 12	AB3	A	238	242	Right-handed 310
Helix 13	AB4	A	256	273	Right-handed alpha
Helix 14	AB5	A	275	280	Right-handed alpha
Helix 15	AB6	A	316	324	Right-handed alpha
Helix 16	AB7	A	324	332	Right-handed alpha
Helix 17	AB8	A	348	361	Right-handed alpha
Helix 18	AB9	A	365	373	Right-handed alpha
Helix 19	AC1	A	374	376	Right-handed 310
Helix 20	AC2	A	378	384	Right-handed alpha
Helix 21	AC3	A	397	415	Right-handed alpha
Helix 22	AC4	A	433	443	Right-handed alpha
Helix 23	AC5	A	449	457	Right-handed alpha
Helix 24	AC6	A	464	470	Right-handed 310
Helix 25	AC7	A	517	526	Right-handed alpha
Helix 26	AC8	A	527	533	Right-handed alpha
Helix 27	AC9	A	537	552	Right-handed alpha
Helix 28	AD1	A	555	561	Right-handed alpha
Helix 29	AD2	A	567	585	Right-handed alpha
Helix 30	AD3	A	646	651	Right-handed alpha
Helix 31	AD4	A	658	684	Right-handed alpha
Helix 32	AD5	A	685	690	Right-handed alpha
Helix 33	AD6	A	736	747	Right-handed alpha
Helix 34	AD7	A	749	759	Right-handed alpha
Helix 35	AD8	A	811	816	Right-handed 310
Helix 36	AD9	A	831	840	Right-handed alpha
Helix 37	AE1	A	844	846	Right-handed 310
Helix 38	AE2	A	864	874	Right-handed alpha
Helix 39	AE3	B	29	39	Right-handed alpha
Helix 40	AE4	B	66	76	Right-handed alpha
Helix 41	AE5	B	120	133	Right-handed alpha
Helix 42	AE6	B	138	146	Right-handed alpha
Helix 43	AE7	B	147	153	Right-handed alpha
Helix 44	AE8	B	156	167	Right-handed alpha
Helix 45	AE9	B	185	194	Right-handed alpha
Helix 46	AF1	B	198	209	Right-handed alpha
Helix 47	AF2	B	209	221	Right-handed alpha
Helix 48	AF3	B	227	236	Right-handed alpha
Helix 49	AF4	B	238	251	Right-handed alpha
Helix 50	AF5	B	251	257	Right-handed alpha
Helix 51	AF6	B	258	263	Right-handed 310
Helix 52	AF7	B	264	274	Right-handed alpha
Helix 53	AF8	B	294	303	Right-handed alpha
Helix 54	AF9	B	304	308	Right-handed 310
Helix 55	AG1	B	309	314	Right-handed alpha
Helix 56	AG2	B	314	343	Right-handed alpha
Helix 57	AG3	B	347	363	Right-handed alpha
Helix 58	AG4	B	364	375	Right-handed alpha
Helix 59	AG5	B	392	400	Right-handed alpha
Helix 60	AG6	B	400	408	Right-handed alpha
Helix 61	AG7	B	409	418	Right-handed alpha
Helix 62	AG8	B	427	437	Right-handed alpha
Helix 63	AG9	B	457	472	Right-handed alpha
Helix 64	AH1	B	473	475	Right-handed 310
Helix 65	AH2	B	500	509	Right-handed alpha
Helix 66	AH3	B	520	525	Right-handed alpha
Helix 67	AH4	B	554	560	Right-handed alpha
Helix 68	AH5	B	561	563	Right-handed 310
Helix 69	AH6	B	565	576	Right-handed alpha
Helix 70	AH7	B	579	592	Right-handed alpha
Helix 71	AH8	B	603	608	Right-handed alpha
Helix 72	AH9	B	638	661	Right-handed alpha
Helix 73	AI1	B	776	793	Right-handed alpha
Helix 74	AI2	B	795	802	Right-handed alpha
Helix 75	AI3	B	812	816	Right-handed 310
Helix 76	AI4	B	852	859	Right-handed alpha
Helix 77	AI5	B	860	862	Right-handed 310
Helix 78	AI6	B	893	908	Right-handed alpha
Helix 79	AI7	B	912	919	Right-handed alpha
Helix 80	AI8	B	927	949	Right-handed alpha
Helix 81	AI9	B	953	957	Right-handed 310
Helix 82	AJ1	C	57	65	Right-handed alpha
Helix 83	AJ2	C	70	81	Right-handed alpha
Helix 84	AJ3	C	89	93	Right-handed 310
Helix 85	AJ4	C	94	113	Right-handed alpha
Helix 86	AJ5	C	161	172	Right-handed alpha
Helix 87	AJ6	C	176	188	Right-handed alpha
Helix 88	AJ7	C	189	194	Right-handed alpha
Helix 89	AJ8	C	225	229	Right-handed alpha
Helix 90	AJ9	C	267	283	Right-handed alpha
Helix 91	AK1	C	297	301	Right-handed 310
Helix 92	AK2	C	329	344	Right-handed alpha
Helix 93	AK3	C	352	356	Right-handed 310
Helix 94	AK4	C	361	373	Right-handed alpha
Helix 95	AK5	C	374	383	Right-handed alpha
Helix 96	AK6	C	412	426	Right-handed alpha
Helix 97	AK7	C	427	429	Right-handed 310
Helix 98	AK8	C	434	448	Right-handed alpha
Helix 99	AK9	C	451	469	Right-handed alpha
Helix 100	AL1	C	469	492	Right-handed alpha
Helix 101	AL2	C	520	542	Right-handed alpha
Helix 102	AL3	C	588	609	Right-handed alpha
Helix 103	AL4	C	610	612	Right-handed 310
Helix 104	AL5	C	615	636	Right-handed alpha
Helix 105	AL6	C	642	647	Right-handed alpha
Helix 106	AL7	C	660	666	Right-handed 310
Helix 107	AL8	C	667	672	Right-handed 310
Helix 108	AL9	C	695	697	Right-handed 310
Helix 109	AM1	C	707	731	Right-handed alpha
Helix 110	AM2	C	740	745	Right-handed alpha

There are 20 sheets in PDB entry 9NNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	120	first strand
Strand 2	A	245	249	parallel
Strand 3	A	285	290	parallel
Strand 4	A	91	97	parallel
Strand 5	A	337	340	parallel
Strand 6	A	879	881	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	303	first strand
Strand 2	A	308	314	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	807	809	first strand
Strand 2	A	392	395	parallel
Strand 3	A	821	823	parallel
Strand 4	A	848	849	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	480	first strand
Strand 2	A	485	495	anti-parallel
Strand 3	A	422	432	anti-parallel
Strand 4	A	790	799	anti-parallel
Strand 5	A	779	787	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	703	first strand
Strand 2	A	706	709	anti-parallel
Strand 3	A	726	732	parallel
Strand 4	A	763	767	anti-parallel
Strand 5	A	773	776	anti-parallel
Strand 6	A	507	510	anti-parallel
Strand 7	A	717	719	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	703	first strand
Strand 2	A	706	709	anti-parallel
Strand 3	A	726	732	parallel
Strand 4	A	499	502	anti-parallel
Strand 5	A	802	804	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	516	first strand
Strand 2	A	692	693	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	56	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	89	96	parallel
Strand 4	B	110	118	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	426	first strand
Strand 2	B	880	886	anti-parallel
Strand 3	B	772	774	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	456	first strand
Strand 2	B	545	549	anti-parallel
Strand 3	B	535	539	anti-parallel
Strand 4	B	613	615	anti-parallel
Strand 5	B	821	823	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	624	632	first strand
Strand 2	B	759	767	anti-parallel
Strand 3	B	674	678	anti-parallel
Strand 4	B	840	843	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	829	830	first strand
Strand 2	B	836	837	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	960	966	first strand
Strand 2	B	970	976	anti-parallel
Strand 3	B	1002	1008	anti-parallel
Strand 4	B	1016	1022	anti-parallel
Strand 5	B	1034	1040	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	56	first strand
Strand 2	C	30	40	anti-parallel
Strand 3	C	7	22	anti-parallel
Strand 4	C	121	126	anti-parallel
Strand 5	C	133	137	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	207	212	anti-parallel
Strand 3	C	196	202	anti-parallel
Strand 4	C	149	157	anti-parallel
Strand 5	C	258	262	parallel
Strand 6	C	320	323	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	237	first strand
Strand 2	C	246	253	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	296	first strand
Strand 2	C	311	312	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	400	first strand
Strand 2	C	560	563	anti-parallel
Strand 3	C	569	573	anti-parallel
Strand 4	C	578	582	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	501	first strand
Strand 2	C	505	510	anti-parallel
Strand 3	C	405	409	anti-parallel
Strand 4	C	553	558	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	648	650	first strand
Strand 2	C	677	682	anti-parallel
Strand 3	C	690	693	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NNP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NNP