Analysis of interatomic Contacts of Structural Units in PDB entry:
9NNZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NNZ entry

There are 2 chains in PDB entry 9NNZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 404VAL 502
B
 MET 1THR 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9NNZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
33 65Right-handed alpha
Helix 2
AA2
B
70 90Right-handed alpha
Helix 3
AA3
B
90 101Right-handed alpha
Helix 4
AA4
B
106 141Right-handed alpha
Helix 5
AA5
B
153 174Right-handed alpha
Helix 6
AA6
B
199 211Right-handed alpha
Helix 7
AA7
B
212 226Right-handed alpha
Helix 8
AA8
B
249 278Right-handed alpha
Helix 9
AA9
B
284 295Right-handed alpha
Helix 10
AB1
B
296 299Right-handed 310
Helix 11
AB2
B
300 310Right-handed alpha
Helix 12
AB3
B
310 320Right-handed alpha
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There are 4 sheets in PDB entry 9NNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 426first strand
Strand 2
A
432 439anti-parallel
Strand 3
A
444 447anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 459first strand
Strand 2
A
466 467anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 480first strand
Strand 2
A
499 500anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 181first strand
Strand 2
B
186 189anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il