Analysis of interatomic Contacts of Structural Units in PDB entry:
9NO5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NO5 entry

There are 3 chains in PDB entry 9NO5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1PRO 194
B
 SER 1PRO 194
C
 SER 1GLY 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 9NO5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 19Right-handed 310
Helix 2
AA2
A
27 45Right-handed alpha
Helix 3
AA3
A
69 79Right-handed alpha
Helix 4
AA4
A
87 101Right-handed alpha
Helix 5
AA5
A
126 141Right-handed alpha
Helix 6
AA6
A
154 159Right-handed alpha
Helix 7
AA7
A
160 162Right-handed 310
Helix 8
AA8
A
178 180Right-handed 310
Helix 9
AA9
A
181 191Right-handed alpha
Helix 10
AB1
B
14 19Right-handed 310
Helix 11
AB2
B
27 45Right-handed alpha
Helix 12
AB3
B
69 79Right-handed alpha
Helix 13
AB4
B
87 101Right-handed alpha
Helix 14
AB5
B
126 140Right-handed alpha
Helix 15
AB6
B
154 159Right-handed alpha
Helix 16
AB7
B
178 180Right-handed 310
Helix 17
AB8
B
181 191Right-handed alpha
Helix 18
AB9
C
14 19Right-handed 310
Helix 19
AC1
C
27 45Right-handed alpha
Helix 20
AC2
C
69 79Right-handed alpha
Helix 21
AC3
C
87 101Right-handed alpha
Helix 22
AC4
C
126 141Right-handed alpha
Helix 23
AC5
C
154 159Right-handed alpha
Helix 24
AC6
C
160 162Right-handed 310
Helix 25
AC7
C
178 180Right-handed 310
Helix 26
AC8
C
181 188Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9NO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
49 56anti-parallel
Strand 3
A
5 12parallel
Strand 4
A
109 116parallel
Strand 5
A
142 149parallel
Strand 6
A
163 164anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
49 56anti-parallel
Strand 3
A
5 12parallel
Strand 4
A
109 116parallel
Strand 5
A
142 149parallel
Strand 6
A
174 176parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
49 56anti-parallel
Strand 3
B
5 12parallel
Strand 4
B
109 116parallel
Strand 5
B
142 149parallel
Strand 6
B
163 164anti-parallel
Strand 7
B
169 170anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
49 56anti-parallel
Strand 3
B
5 12parallel
Strand 4
B
109 116parallel
Strand 5
B
142 149parallel
Strand 6
B
174 176parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 62first strand
Strand 2
C
49 56anti-parallel
Strand 3
C
5 12parallel
Strand 4
C
109 116parallel
Strand 5
C
142 149parallel
Strand 6
C
163 164anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 62first strand
Strand 2
C
49 56anti-parallel
Strand 3
C
5 12parallel
Strand 4
C
109 116parallel
Strand 5
C
142 149parallel
Strand 6
C
174 176parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il