Analysis of interatomic Contacts of Structural Units in PDB entry:
9NOM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NOM entry

There are 2 chains in PDB entry 9NOM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 16	ARG 597
B	ALA 16	VAL 600

There are 62 helices in PDB entry 9NOM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	38	Right-handed alpha
Helix 2	AA2	A	78	81	Right-handed 310
Helix 3	AA3	A	93	102	Right-handed alpha
Helix 4	AA4	A	111	128	Right-handed alpha
Helix 5	AA5	A	136	141	Right-handed alpha
Helix 6	AA6	A	144	152	Right-handed alpha
Helix 7	AA7	A	169	177	Right-handed alpha
Helix 8	AA8	A	178	181	Right-handed 310
Helix 9	AA9	A	205	229	Right-handed alpha
Helix 10	AB1	A	242	249	Right-handed alpha
Helix 11	AB2	A	249	254	Right-handed alpha
Helix 12	AB3	A	254	260	Right-handed alpha
Helix 13	AB4	A	309	328	Right-handed alpha
Helix 14	AB5	A	330	337	Right-handed alpha
Helix 15	AB6	A	351	357	Right-handed alpha
Helix 16	AB7	A	362	366	Right-handed 310
Helix 17	AB8	A	376	380	Right-handed 310
Helix 18	AB9	A	390	394	Right-handed 310
Helix 19	AC1	A	401	410	Right-handed alpha
Helix 20	AC2	A	413	435	Right-handed alpha
Helix 21	AC3	A	478	485	Right-handed 310
Helix 22	AC4	A	489	493	Right-handed 310
Helix 23	AC5	A	494	499	Right-handed alpha
Helix 24	AC6	A	505	516	Right-handed alpha
Helix 25	AC7	A	520	539	Right-handed alpha
Helix 26	AC8	A	542	549	Right-handed alpha
Helix 27	AC9	A	560	566	Right-handed alpha
Helix 28	AD1	A	578	582	Right-handed 310
Helix 29	AD2	A	592	597	Right-handed 310
Helix 30	AD3	B	19	38	Right-handed alpha
Helix 31	AD4	B	77	81	Right-handed 310
Helix 32	AD5	B	93	101	Right-handed alpha
Helix 33	AD6	B	108	110	Right-handed 310
Helix 34	AD7	B	111	128	Right-handed alpha
Helix 35	AD8	B	130	134	Right-handed 310
Helix 36	AD9	B	136	142	Right-handed alpha
Helix 37	AE1	B	144	152	Right-handed alpha
Helix 38	AE2	B	169	177	Right-handed alpha
Helix 39	AE3	B	178	181	Right-handed 310
Helix 40	AE4	B	205	215	Right-handed alpha
Helix 41	AE5	B	215	228	Right-handed alpha
Helix 42	AE6	B	232	234	Right-handed 310
Helix 43	AE7	B	242	249	Right-handed alpha
Helix 44	AE8	B	249	254	Right-handed alpha
Helix 45	AE9	B	254	260	Right-handed alpha
Helix 46	AF1	B	309	328	Right-handed alpha
Helix 47	AF2	B	330	337	Right-handed alpha
Helix 48	AF3	B	351	357	Right-handed alpha
Helix 49	AF4	B	362	366	Right-handed 310
Helix 50	AF5	B	376	380	Right-handed 310
Helix 51	AF6	B	390	394	Right-handed 310
Helix 52	AF7	B	401	411	Right-handed alpha
Helix 53	AF8	B	413	436	Right-handed alpha
Helix 54	AF9	B	478	482	Right-handed 310
Helix 55	AG1	B	489	493	Right-handed 310
Helix 56	AG2	B	494	499	Right-handed alpha
Helix 57	AG3	B	505	516	Right-handed alpha
Helix 58	AG4	B	520	539	Right-handed alpha
Helix 59	AG5	B	542	549	Right-handed alpha
Helix 60	AG6	B	560	566	Right-handed alpha
Helix 61	AG7	B	578	583	Right-handed alpha
Helix 62	AG8	B	593	597	Right-handed 310

There are 16 sheets in PDB entry 9NOM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	50	54	anti-parallel
Strand 3	A	60	69	anti-parallel
Strand 4	A	73	76	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	50	54	anti-parallel
Strand 3	A	60	69	anti-parallel
Strand 4	A	82	85	anti-parallel
Strand 5	A	88	90	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	241	first strand
Strand 2	A	187	192	anti-parallel
Strand 3	A	263	268	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	343	349	anti-parallel
Strand 3	A	369	373	anti-parallel
Strand 4	A	292	295	anti-parallel
Strand 5	A	281	284	anti-parallel
Strand 6	A	273	275	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	301	first strand
Strand 2	A	304	306	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	455	461	parallel
Strand 3	A	447	452	anti-parallel
Strand 4	A	384	388	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	439	first strand
Strand 2	A	469	470	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	557	first strand
Strand 2	A	588	590	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	51	54	anti-parallel
Strand 3	B	60	64	anti-parallel
Strand 4	B	82	85	anti-parallel
Strand 5	B	88	90	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	73	74	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	241	first strand
Strand 2	B	187	192	anti-parallel
Strand 3	B	263	268	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	200	first strand
Strand 2	B	343	349	anti-parallel
Strand 3	B	369	373	anti-parallel
Strand 4	B	292	295	anti-parallel
Strand 5	B	281	284	anti-parallel
Strand 6	B	273	275	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	B	304	305	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	455	461	parallel
Strand 3	B	447	452	anti-parallel
Strand 4	B	384	388	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	439	first strand
Strand 2	B	469	470	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	555	557	first strand
Strand 2	B	588	590	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NOM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NOM