Analysis of interatomic Contacts of Structural Units in PDB entry:
9NOT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NOT entry

There are 2 chains in PDB entry 9NOT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 23	THR 825
A	SER 25	GLU 820

There are 58 helices in PDB entry 9NOT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	25	28	Right-handed 310
Helix 2	AA2	B	66	86	Right-handed alpha
Helix 3	AA3	B	106	118	Right-handed alpha
Helix 4	AA4	B	130	134	Right-handed 310
Helix 5	AA5	B	146	158	Right-handed alpha
Helix 6	AA6	B	171	176	Right-handed 310
Helix 7	AA7	B	189	205	Right-handed alpha
Helix 8	AA8	B	216	234	Right-handed alpha
Helix 9	AA9	B	256	266	Right-handed alpha
Helix 10	AB1	B	276	291	Right-handed alpha
Helix 11	AB2	B	300	305	Right-handed alpha
Helix 12	AB3	B	306	311	Right-handed alpha
Helix 13	AB4	B	314	318	Right-handed 310
Helix 14	AB5	B	333	347	Right-handed alpha
Helix 15	AB6	B	347	354	Right-handed alpha
Helix 16	AB7	B	370	374	Right-handed 310
Helix 17	AB8	B	377	385	Right-handed 310
Helix 18	AB9	B	388	408	Right-handed alpha
Helix 19	AC1	B	422	425	Right-handed 310
Helix 20	AC2	B	426	431	Right-handed alpha
Helix 21	AC3	B	566	593	Right-handed alpha
Helix 22	AC4	B	596	602	Right-handed alpha
Helix 23	AC5	B	604	622	Right-handed alpha
Helix 24	AC6	B	629	664	Right-handed alpha
Helix 25	AC7	B	665	677	Right-handed alpha
Helix 26	AC8	B	678	702	Right-handed alpha
Helix 27	AC9	B	728	749	Right-handed alpha
Helix 28	AD1	B	761	785	Right-handed alpha
Helix 29	AD2	B	786	788	Right-handed 310
Helix 30	AD3	B	789	819	Right-handed alpha
Helix 31	AD4	B	820	824	Right-handed 310
Helix 32	AD5	A	58	62	Right-handed 310
Helix 33	AD6	A	65	85	Right-handed alpha
Helix 34	AD7	A	108	116	Right-handed alpha
Helix 35	AD8	A	143	155	Right-handed alpha
Helix 36	AD9	A	168	172	Right-handed 310
Helix 37	AE1	A	186	201	Right-handed alpha
Helix 38	AE2	A	213	228	Right-handed alpha
Helix 39	AE3	A	250	266	Right-handed alpha
Helix 40	AE4	A	277	279	Right-handed 310
Helix 41	AE5	A	280	292	Right-handed alpha
Helix 42	AE6	A	307	313	Right-handed alpha
Helix 43	AE7	A	314	319	Right-handed 310
Helix 44	AE8	A	335	342	Right-handed alpha
Helix 45	AE9	A	365	373	Right-handed alpha
Helix 46	AF1	A	373	381	Right-handed alpha
Helix 47	AF2	A	384	403	Right-handed alpha
Helix 48	AF3	A	416	425	Right-handed alpha
Helix 49	AF4	A	563	590	Right-handed alpha
Helix 50	AF5	A	593	599	Right-handed alpha
Helix 51	AF6	A	600	618	Right-handed alpha
Helix 52	AF7	A	619	621	Right-handed 310
Helix 53	AF8	A	626	665	Right-handed alpha
Helix 54	AF9	A	665	675	Right-handed alpha
Helix 55	AG1	A	676	701	Right-handed alpha
Helix 56	AG2	A	723	749	Right-handed alpha
Helix 57	AG3	A	757	782	Right-handed alpha
Helix 58	AG4	A	787	817	Right-handed alpha

There are 18 sheets in PDB entry 9NOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	95	98	anti-parallel
Strand 3	B	35	37	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	100	101	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	64	65	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	A	121	123	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	164	166	parallel
Strand 3	B	183	185	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	243	first strand
Strand 2	B	208	214	parallel
Strand 3	B	270	274	parallel
Strand 4	B	296	299	parallel
Strand 5	B	321	326	parallel
Strand 6	B	454	462	anti-parallel
Strand 7	B	465	474	anti-parallel
Strand 8	B	478	480	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	436	first strand
Strand 2	B	441	443	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	529	first strand
Strand 2	B	539	540	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	545	546	first strand
Strand 2	B	555	556	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	706	708	first strand
Strand 2	B	721	723	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	96	101	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	135	139	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	63	64	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	180	182	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	240	first strand
Strand 2	A	205	211	parallel
Strand 3	A	271	275	parallel
Strand 4	A	297	300	parallel
Strand 5	A	322	327	parallel
Strand 6	A	448	453	anti-parallel
Strand 7	A	462	469	anti-parallel
Strand 8	A	474	476	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	430	first strand
Strand 2	A	435	437	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	507	first strand
Strand 2	A	515	519	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	525	first strand
Strand 2	A	536	537	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	557	first strand
Strand 2	A	715	719	parallel
Strand 3	A	705	707	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NOT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NOT