Analysis of interatomic Contacts of Structural Units in PDB entry:
9NOV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NOV entry

There are 2 chains in PDB entry 9NOV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 23	CYS 521
A	SER 25	ILE 518

There are 37 helices in PDB entry 9NOV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	25	28	Right-handed 310
Helix 2	AA2	B	66	86	Right-handed alpha
Helix 3	AA3	B	105	118	Right-handed alpha
Helix 4	AA4	B	130	134	Right-handed 310
Helix 5	AA5	B	146	158	Right-handed alpha
Helix 6	AA6	B	171	176	Right-handed 310
Helix 7	AA7	B	189	205	Right-handed alpha
Helix 8	AA8	B	216	234	Right-handed alpha
Helix 9	AA9	B	256	266	Right-handed alpha
Helix 10	AB1	B	276	290	Right-handed alpha
Helix 11	AB2	B	306	311	Right-handed alpha
Helix 12	AB3	B	314	318	Right-handed 310
Helix 13	AB4	B	333	346	Right-handed alpha
Helix 14	AB5	B	347	354	Right-handed alpha
Helix 15	AB6	B	370	374	Right-handed 310
Helix 16	AB7	B	377	381	Right-handed 310
Helix 17	AB8	B	382	387	Right-handed 310
Helix 18	AB9	B	388	408	Right-handed alpha
Helix 19	AC1	B	422	424	Right-handed 310
Helix 20	AC2	B	425	431	Right-handed alpha
Helix 21	AC3	B	482	485	Right-handed 310
Helix 22	AC4	A	58	62	Right-handed 310
Helix 23	AC5	A	65	85	Right-handed alpha
Helix 24	AC6	A	108	116	Right-handed alpha
Helix 25	AC7	A	143	155	Right-handed alpha
Helix 26	AC8	A	168	172	Right-handed 310
Helix 27	AC9	A	186	201	Right-handed alpha
Helix 28	AD1	A	213	228	Right-handed alpha
Helix 29	AD2	A	250	267	Right-handed alpha
Helix 30	AD3	A	280	292	Right-handed alpha
Helix 31	AD4	A	307	312	Right-handed alpha
Helix 32	AD5	A	316	318	Right-handed 310
Helix 33	AD6	A	334	342	Right-handed alpha
Helix 34	AD7	A	364	372	Right-handed alpha
Helix 35	AD8	A	373	381	Right-handed alpha
Helix 36	AD9	A	383	404	Right-handed alpha
Helix 37	AE1	A	416	425	Right-handed alpha

There are 12 sheets in PDB entry 9NOV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	97	101	anti-parallel
Strand 3	B	38	41	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	64	65	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	A	121	123	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	164	166	parallel
Strand 3	B	183	185	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	240	first strand
Strand 2	B	208	213	parallel
Strand 3	B	270	274	parallel
Strand 4	B	296	299	parallel
Strand 5	B	321	326	parallel
Strand 6	B	454	460	anti-parallel
Strand 7	B	467	474	anti-parallel
Strand 8	B	479	480	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	437	first strand
Strand 2	B	440	443	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	512	first strand
Strand 2	B	518	519	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	96	100	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	135	139	parallel
Strand 5	A	161	163	parallel
Strand 6	A	180	182	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	63	64	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	240	first strand
Strand 2	A	205	211	parallel
Strand 3	A	272	275	parallel
Strand 4	A	296	300	parallel
Strand 5	A	320	327	parallel
Strand 6	A	448	453	anti-parallel
Strand 7	A	462	469	anti-parallel
Strand 8	A	474	476	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	435	436	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	507	first strand
Strand 2	A	515	516	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NOV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NOV