Analysis of interatomic Contacts of Structural Units in PDB entry:
9NP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9NP6 entry

There are 3 chains in PDB entry 9NP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 16GLN 1039
B
 LEU 22PRO 878
X
 A 3 A 59
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 9NP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 46Right-handed alpha
Helix 2
AA2
A
64 77Right-handed alpha
Helix 3
AA3
A
93 105Right-handed alpha
Helix 4
AA4
A
120 133Right-handed alpha
Helix 5
AA5
A
154 171Right-handed alpha
Helix 6
AA6
A
174 180Right-handed alpha
Helix 7
AA7
A
188 203Right-handed alpha
Helix 8
AA8
A
226 235Right-handed alpha
Helix 9
AA9
A
240 248Right-handed alpha
Helix 10
AB1
A
261 272Right-handed alpha
Helix 11
AB2
A
316 328Right-handed alpha
Helix 12
AB3
A
356 374Right-handed alpha
Helix 13
AB4
A
392 402Right-handed alpha
Helix 14
AB5
A
419 435Right-handed alpha
Helix 15
AB6
A
439 448Right-handed alpha
Helix 16
AB7
A
454 467Right-handed alpha
Helix 17
AB8
A
476 487Right-handed alpha
Helix 18
AB9
A
496 514Right-handed alpha
Helix 19
AC1
A
518 523Right-handed alpha
Helix 20
AC2
A
523 531Right-handed alpha
Helix 21
AC3
A
534 541Right-handed alpha
Helix 22
AC4
A
546 568Right-handed alpha
Helix 23
AC5
A
578 584Right-handed alpha
Helix 24
AC6
A
640 648Right-handed alpha
Helix 25
AC7
A
666 678Right-handed alpha
Helix 26
AC8
A
701 709Right-handed alpha
Helix 27
AC9
A
727 740Right-handed alpha
Helix 28
AD1
A
750 763Right-handed alpha
Helix 29
AD2
A
770 778Right-handed 310
Helix 30
AD3
A
797 801Right-handed 310
Helix 31
AD4
A
807 815Right-handed alpha
Helix 32
AD5
A
823 838Right-handed alpha
Helix 33
AD6
A
842 854Right-handed alpha
Helix 34
AD7
A
855 857Right-handed 310
Helix 35
AD8
A
863 886Right-handed alpha
Helix 36
AD9
A
943 948Right-handed alpha
Helix 37
AE1
A
950 960Right-handed alpha
Helix 38
AE2
A
996 1012Right-handed alpha
Helix 39
AE3
A
1026 1030Right-handed 310
Helix 40
AE4
B
28 36Right-handed alpha
Helix 41
AE5
B
53 63Right-handed alpha
Helix 42
AE6
B
80 100Right-handed alpha
Helix 43
AE7
B
119 130Right-handed alpha
Helix 44
AE8
B
144 158Right-handed alpha
Helix 45
AE9
B
172 187Right-handed alpha
Helix 46
AF1
B
191 196Right-handed 310
Helix 47
AF2
B
201 206Right-handed alpha
Helix 48
AF3
B
221 249Right-handed alpha
Helix 49
AF4
B
253 268Right-handed alpha
Helix 50
AF5
B
271 279Right-handed alpha
Helix 51
AF6
B
363 371Right-handed alpha
Helix 52
AF7
B
372 376Right-handed 310
Helix 53
AF8
B
403 420Right-handed alpha
Helix 54
AF9
B
437 441Right-handed 310
Helix 55
AG1
B
445 450Right-handed alpha
Helix 56
AG2
B
462 466Right-handed 310
Helix 57
AG3
B
469 474Right-handed alpha
Helix 58
AG4
B
476 481Right-handed alpha
Helix 59
AG5
B
484 487Right-handed 310
Helix 60
AG6
B
488 493Right-handed alpha
Helix 61
AG7
B
500 515Right-handed alpha
Helix 62
AG8
B
524 529Right-handed alpha
Helix 63
AG9
B
554 573Right-handed alpha
Helix 64
AH1
B
574 576Right-handed 310
Helix 65
AH2
B
579 590Right-handed alpha
Helix 66
AH3
B
594 599Right-handed alpha
Helix 67
AH4
B
610 623Right-handed alpha
Helix 68
AH5
B
634 644Right-handed alpha
Helix 69
AH6
B
663 667Right-handed 310
Helix 70
AH7
B
702 706Right-handed 310
Helix 71
AH8
B
727 759Right-handed alpha
Helix 72
AH9
B
783 794Right-handed alpha
Helix 73
AI1
B
840 851Right-handed alpha
Helix 74
AI2
B
864 876Right-handed alpha
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There are 9 sheets in PDB entry 9NP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
306 308parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 354first strand
Strand 2
A
683 689parallel
Strand 3
A
618 622parallel
Strand 4
A
382 386parallel
Strand 5
A
604 607parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 796first strand
Strand 2
A
912 924parallel
Strand 3
A
891 900anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 796first strand
Strand 2
A
912 924parallel
Strand 3
A
930 933anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
974 978first strand
Strand 2
A
988 992anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1020 1022first strand
Strand 2
B
827 829anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
74 78parallel
Strand 3
B
281 284parallel
Strand 4
B
311 315parallel
Strand 5
B
42 44parallel
Strand 6
B
350 351parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
251 252parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 402first strand
Strand 2
B
765 772parallel
Strand 3
B
675 677parallel
Strand 4
B
432 433parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il