Analysis of interatomic Contacts of Structural Units in PDB entry:
9NR8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9NR8 entry

There are 6 chains in PDB entry 9NR8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	ALA 373
B	ALA 2	ILE 379
C	ASN 2	ALA 373
D	ALA 2	ILE 379
E	GLU 1	ARG 246
F	GLU 1	ARG 246

There are 51 helices in PDB entry 9NR8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	30	Right-handed alpha
Helix 2	AA2	A	48	63	Right-handed alpha
Helix 3	AA3	A	75	87	Right-handed alpha
Helix 4	AA4	A	113	122	Right-handed alpha
Helix 5	AA5	A	133	136	Right-handed 310
Helix 6	AA6	A	137	151	Right-handed alpha
Helix 7	AA7	A	163	175	Right-handed alpha
Helix 8	AA8	A	187	201	Right-handed alpha
Helix 9	AA9	A	223	227	Right-handed 310
Helix 10	AB1	A	242	254	Right-handed alpha
Helix 11	AB2	A	269	292	Right-handed alpha
Helix 12	AB3	A	315	323	Right-handed alpha
Helix 13	AB4	B	17	33	Right-handed alpha
Helix 14	AB5	B	55	70	Right-handed alpha
Helix 15	AB6	B	79	81	Right-handed 310
Helix 16	AB7	B	82	93	Right-handed alpha
Helix 17	AB8	B	118	129	Right-handed alpha
Helix 18	AB9	B	144	158	Right-handed alpha
Helix 19	AC1	B	170	184	Right-handed alpha
Helix 20	AC2	B	194	209	Right-handed alpha
Helix 21	AC3	B	230	236	Right-handed alpha
Helix 22	AC4	B	249	261	Right-handed alpha
Helix 23	AC5	B	275	298	Right-handed alpha
Helix 24	AC6	B	321	330	Right-handed alpha
Helix 25	AC7	C	18	30	Right-handed alpha
Helix 26	AC8	C	48	63	Right-handed alpha
Helix 27	AC9	C	75	86	Right-handed alpha
Helix 28	AD1	C	113	122	Right-handed alpha
Helix 29	AD2	C	133	136	Right-handed 310
Helix 30	AD3	C	137	151	Right-handed alpha
Helix 31	AD4	C	163	176	Right-handed alpha
Helix 32	AD5	C	187	202	Right-handed alpha
Helix 33	AD6	C	223	227	Right-handed 310
Helix 34	AD7	C	242	255	Right-handed alpha
Helix 35	AD8	C	269	292	Right-handed alpha
Helix 36	AD9	C	315	324	Right-handed alpha
Helix 37	AE1	D	17	33	Right-handed alpha
Helix 38	AE2	D	36	40	Right-handed 310
Helix 39	AE3	D	55	70	Right-handed alpha
Helix 40	AE4	D	79	81	Right-handed 310
Helix 41	AE5	D	82	91	Right-handed alpha
Helix 42	AE6	D	118	129	Right-handed alpha
Helix 43	AE7	D	144	158	Right-handed alpha
Helix 44	AE8	D	170	184	Right-handed alpha
Helix 45	AE9	D	194	209	Right-handed alpha
Helix 46	AF1	D	230	236	Right-handed alpha
Helix 47	AF2	D	249	262	Right-handed alpha
Helix 48	AF3	D	275	298	Right-handed alpha
Helix 49	AF4	D	321	330	Right-handed alpha
Helix 50	AF5	E	217	221	Right-handed 310
Helix 51	AF6	F	217	221	Right-handed 310

There are 23 sheets in PDB entry 9NR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	43	first strand
Strand 2	A	6	13	parallel
Strand 3	A	66	69	parallel
Strand 4	A	89	92	parallel
Strand 5	A	104	106	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	158	first strand
Strand 2	A	126	131	parallel
Strand 3	A	181	185	parallel
Strand 4	A	209	212	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	236	first strand
Strand 2	A	348	353	anti-parallel
Strand 3	A	360	365	anti-parallel
Strand 4	A	369	372	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	343	344	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	10	13	parallel
Strand 3	B	73	75	parallel
Strand 4	B	96	99	parallel
Strand 5	B	111	113	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	165	first strand
Strand 2	B	133	138	parallel
Strand 3	B	188	192	parallel
Strand 4	B	216	219	parallel
Strand 5	B	238	243	parallel
Strand 6	B	353	359	anti-parallel
Strand 7	B	365	371	anti-parallel
Strand 8	B	376	378	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	339	343	anti-parallel
Strand 3	B	349	350	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	43	first strand
Strand 2	C	6	13	parallel
Strand 3	C	66	69	parallel
Strand 4	C	89	92	parallel
Strand 5	C	104	106	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	158	first strand
Strand 2	C	126	131	parallel
Strand 3	C	181	185	parallel
Strand 4	C	209	212	parallel
Strand 5	C	232	236	parallel
Strand 6	C	347	353	anti-parallel
Strand 7	C	360	365	anti-parallel
Strand 8	C	369	372	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	330	first strand
Strand 2	C	333	334	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	343	344	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	43	44	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	73	75	parallel
Strand 3	D	96	99	parallel
Strand 4	D	111	113	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	165	first strand
Strand 2	D	133	138	parallel
Strand 3	D	188	192	parallel
Strand 4	D	216	219	parallel
Strand 5	D	238	243	parallel
Strand 6	D	354	360	anti-parallel
Strand 7	D	363	370	anti-parallel
Strand 8	D	376	378	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	336	first strand
Strand 2	D	339	341	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	20	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	50	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	93	97	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	141	first strand
Strand 2	E	153	159	anti-parallel
Strand 3	E	208	213	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	147	first strand
Strand 2	E	240	244	parallel
Strand 3	E	222	228	anti-parallel
Strand 4	E	171	176	anti-parallel
Strand 5	E	183	187	anti-parallel
Strand 6	E	191	192	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	20	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	50	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	93	97	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	138	141	first strand
Strand 2	F	153	159	anti-parallel
Strand 3	F	209	213	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	147	first strand
Strand 2	F	240	244	parallel
Strand 3	F	223	228	anti-parallel
Strand 4	F	171	176	anti-parallel
Strand 5	F	183	187	anti-parallel
Strand 6	F	191	192	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9NR8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9NR8